Kyushu University Academic Staff Educational and Research Activities Database
List of Papers
Hidenori Tachida Last modified date:2017.10.05

Professor / dynamic biology / Department of Biology / Faculty of Sciences


Papers
1. Makiko Mimura, Tetsukazu Yahara, Daniel P. Faith, JAVADI FIROUZEH, Yuya Fukano, Yo-Ichiro Sato, Hidenori Tachida, Andrew P. Hendry, Understanding and monitoring the consequences of human impacts on intraspecific variation, Evolutionary Applications, 10, 2017.09.
2. Yuka Ikezaki, Yoshihisa Suyama, Beth A. Middleton, Yoshihiko Tsumura, Kosuke Teshima, Hidenori Tachida, Junko Kusumi, Inferences of population structure and demographic history for Taxodium distichum , a coniferous tree in North America, based on amplicon sequencing analysis., American Journal of Botany, 103, 11, 2016.11.
3. Junko Kusumi, Yoshihiko Tsumur, Hidenori Tachida, Evolutionary rate variation in two conifer species, Taxodium distichum (L.) Rich. var. distichum (baldcypress) and Cryptomeria japonica (Thunb. ex L.f.) D. Don (Sugi, Japanese cedar), Genes & Genetic Systems, 90, 5, 2015.10.
4. Miho Tamura, Yosuke Hisataka, Etsuko Moritsuka, Watanabe Atsushi, Centro Uchiyama, Norihiro Futamura5, Kenji Shinohara, Yoshihiko Tsumura, Hidenori Tachida, Analyses of random BAC clone sequences of Japanese cedar, Cryptomeria japonica., Tree Genetics & Genomes, 11, 2015.09.
5. T. Matsumoto, H. Tachida, K. NItta, A. Yasumoto, S. Hirota, T. Yahara, Difference in flowering time can initiate speciation of nocturnally flowering species, JOURNAL OF THEORETICAL BIOLOGY, 370, 61-71, 2015.04.
6. K. Shirai, N. Inomata, S. Mizoiri, M. Aibara, Y. Terai, N. Okada, H. Tachida, High prevalence of non-synonymous substitutions in mtDNA of cichlid fishes from Lake Victoria, GENE, 552, 2, 239-245, 2014.12.
7. Takanori Yoshida, Manami Tamekuni, Tetsukazu Yahara, Nobuyuki Inomata, Hidenori Tachida, Demographic history of a common pioneer tree, Zanthoxylum ailanthoides, reconstructed using isolation-with-migration model, Tree Genetics & Genomes, 10, 2014.06.
8. Tomotaka Matsumoto, Yohey Terai, Norihiro Okada, Hidenori Tachida, Sensory drive speciation and patterns of variation at selectively neutral genes, Evolutionary Ecology, 28, 2014.04.
9. 武田深幸, 楠見 淳子, 舘田 英典, Genetic Structure of Pelagic and Littoral Cichlid Fishes from Lake Victoria, PLOS ONE, 8, 9, 2013.09.
10. Tomotaka Matsumoto, AkikoAYasumoto, 新田 梢, Tetsukazu Yahara, Hidenori Tachida, Difference in flowering time as an isolating barrier, Journal of Theoretical Biology, 317, 2013.02.
11. Hitomi Kawaida, Kohki Ohba, Yuhki Koutake, Hiroshi Shimizu, Hidenori Tachida, Yoshitaka Kobayakawa, Symbiosis between hydra and chlorella: Molecular phylogenetic analysis and experimental study provide insight into its origin and evolution, Molecular Phylogenetics and Evolution, 66, 2013.03.
12. Nakatada Wachi, Yoshihisa Abe, Nobuyuki Inomata, ALFRED EDWARD SZMIDT, Hidenori Tachida, Speciation history of three closely related oak gall wasps, Andricus mukaigawae, A. kashiwaphilus, and A. pseudoflos (Hymenoptera: Cynipidae) inferred from nuclear and mitochondrial DNA sequences
, Molecular Ecology, 21, 4681-4694, 2012.10.
13. Hidenori Tachida, Linkage disequilibrium in a population undergoing periodic fragmentation and admixture, Genes & Genetic System, 87, 2, 2012.04.
14. Ayako Tanaka, Masato Ohtani, Yoshihiko Suyama, Yoshihiko Tsumura, Nobuyuki Inomata, Beth. A. Middleton, Hidenori Tachida, Junko Kusumi, Population genetic structure of a widespread coniferous tree Taxodium distichum [L.] Rich. (Cupressaceae) in the Mississippi River Alluvial Valley and Florida., Tree Genetics & Genomes, 8, 2012.08.
15. E. Moritsuka, Y. Hisataka, M. Tamura, K. Uchiyama, A. Watanabe, Y. Tsumura, and H. Tachida, Extended linkage disequilibrium in non-coding regions in a conifer, Cryptomeria japonica., Genetics, 190, 45-48, 2012.03.
16. M. Tamura and H. Tachida, Evolution of the number of LRRs in plant disease resistance genes, Molecular Genetics and Genomics, 285, 393–402, 2011.05.
17. H. Kawaida, H. Shimizu, T. Fujisawa, H. Tachida, Y. Kobayakawa, Molecular phylogenetic study in genus Hydra., Gene, 468, 30–40., 2010.11.
18. J. Kusumi, L. Zidong, T. Kado, Y. Tsumura,B. A. Middleton, and H. Tachida, Multilocus patterns of nucleotide polymorphism and demographic change in Taxodium distichum (Cupressaceae) in the lower Mississippi River Alluvial Valley. , American Journal of Botany, 97, 11, 1–10, 2010.11.
19. T. Yoshida, H. Nagai, T. Yahara, and H. Tachida, Genetic structure and putative selective sweep in pioneer tree, Zanthoxylum ailanthoides., J. Plant Res., 123, 607-616, 2010.05.
20. S. I. Mzighani, M. Nikaido, M. Takeda, O. Seehausen, Y. L. Budeba, B. P. Ngatunga, E. F.B. Katunzi, M. Aibara, S. Mizoiri, T. Sato, H. Tachida, N. Okada, Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria—An analysis based on SINEs and mitochondrial DNA., Gene, 450, 39-47, 2010.05.
21. K. Maeda, M. Takeda, K. Kamiya, M. Aibara, S. I. Mzighani, M. Nishida, S. Mizoiri, T. Sato, Y. Terai, N. Okada, H. Tachida, Population structure of two closely related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and H. laparogramma. , Gene, 441, 67-73, 2009.05.
22. Mikiko Soejima, Hidenori Tachida and Yoshiro Koda, Sequence analysis of human TRPV6 suggests positive selection outside Africa gene., Biochem. Genet., 47:147–153., 2009.05.
23. H. Nagai, T. Yoshida, K. Kamiya, T. Yahara and H. Tachida, Development and characterization of microsatellite markers in Zanthoxylum ailanthoides (Rutaceae). , Mol. Ecol. Res., 9: 667–669., 2009.01.
24. Ole Seehausen, Yohey Terai, Isabel S. Magalhaes, Karen L. Carleton, Hillary D. J. Mrosso, Ryutaro Miyagi, Inke van der Sluijs, Maria V. Schneider, Martine E. Maan, Hidenori Tachida, Hiroo Imai, and Norihiro Okada, Speciation through sensory drive in cichlid fish. , Nature, 455: 620-627., 2008.10.
25. Akihiro Fujimoto, Tomoyuki Kado, Hiroshi Yoshimaru, Yoshihiko Tsumura and Hidenori Tachida, Adaptive and Slightly Deleterious Evolution in a Conifer, Cryptomeria japonica. , Journal of Molecular Evolution, 67: :201-210, 2008.10.
26. K. Kamiya, E. Moritsuka, T. Yoshida, T. Yahara, and H. Tachida, High population differentiation and unusual haplotype structure in a shade-intolerant pioneer tree species, Zanthoxylum ailanthoides (Rutaceae) revealed by analysis of DNA polymorphism at four nuclear loci., Mol. Ecol., 17: 2329-2338., 2008.05.
27. K. Maeda, H. Takeshima, S. Mizoiri, N. Okada, M. Nishida and H. Tachida, Isolation and characterization of microsatellite loci in the cichlid fish in Lake Victoria, Haplochromis chilotes., Mol. Ecol. Resources, 8, 428-430., 2008.02.
28. Yohey Terai, Ole Seehause, Takeshi Sasaki, Kazuhiko Takahashi, Shinji Mizoiri, Tohru Sugawara, Tetsu Sato1,Masakatsu Watanabe1, Nellie Konijnendijk, Hillary D. J. Mrosso, Hidenori Tachida, Hiroo Imai, Yoshinori Shichida, Norihiro Okada, Divergent Selection on Opsins Drives Incipient Speciation in Lake Victoria Cichlids., PLoS Biology, 4: e433, 2006.12.
29. Yasuyuki Hashiguchi, Tomoyuki Kado, Seiro Kimura and Hidenori Tachida, Comparative phylogeography of closely related freshwater fishes, Tanakia lanceolata and T. limbata (Teleostei, Cyprinidae) in western Japan, based on mitochondrial DNA analysis., Zool. Sci., 23 (4): 309-322., 2006.04.
30. T. Kado, Y. Ushio, H.Yoshimaru, Y. Tsumura and H. Tachida, Contrasting patterns of DNA variation in natural populations of closely related conifers, Cryptomeria japonica and Taxodium distichum (Cupressaceae sensu lato)., Genes & Genetic System, 82 (2): 103-113., 2006.03.
31. Junko Kusumi, Aya Sato and Hidenori Tachida, Relaxation of functional constraint on light-independent protochlorophyllide oxidoreductase in Thuja., Mol. Biol. Evol., 23 (5) 941-948., 2006.05.
32. Mikiko Soejima, Hidenori Tachida, Takafumi Ishida, Akinori Sano, and Yoshiro Koda, Evidence for recent positive selection at the human AIM1 locus in a European population., Mol. Biol. Evol., 23: 179-188., 2006.01.
33. K. Kitamura, H. Tachida, K. Takenaka, K. Furubayashi and S. Kawano, Demographic genetics of Siebold's beech (Fagaceae, Fagus crenata Blume) populations in the Tanzawa Mountains, central Hoshu, Japan. II. Spatial differentiation and estimation of immigration rates using a stepping-stone structure., Plant Species Biology, 20, 2, 20: 133-144., 2005.08.
34. Junko Kusumi and Hidenori Tachida, Compositional properties of green-plant plastid genomes., J. Mol. Evol., 60, 4, 60 (4) : 417-425., 2005.04.
35. M. Soejima, H. Tachida, M. Tsuneoka, O. Takenaka, H. Kimura, and Y. Koda, Evidence for Balancing Selection from Nucleotide Sequence Analyses of Human Complement 6 (C6) Gene., Ann. Hum. Genet., 69(3): 239-252., 2005.05.
36. Koich Kamiya, Ko Harada, Hidenori Tachida, and Peter Shaw Ashton, Phylogeny of PgiC gene in Shorea and its closely related genera (DIPTEROCARPACEAE), the dominant trees in South East Asian tropical rainforests., American Journal of Botany, 92, 5, 92(5): 775-788., 2005.05.
37. A. Sano and H. Tachida, Gene Genealogy and Properties of Test Statistics of Neutrality Under Population Growth., GENETICS, 169, 3, 169: 1687-1697., 2005.03.
38. T, Kado, A. Fujimoto, L.H. Giang, M. Tuanm P. N. Hong, K. Harada, H. Tachida, Genetic structures of natural populations of three mangrove species, Avicennia marina, Kandelia candel and Lumnitzera racemosa, in Vientnam revealed by maturase sequences of plastid., Plant Species Biology, 19, 91-99, 2004.08.
39. Y. Koda, H. Tachida, M. Soejima, O. Takenaka and H. Kimura, Population differences in DNA sequence variation and linkage disequilibrium at the PON1 gene., Ann Hum Genet., 68, 68(2):110-119., 2004.03.
40. Y. Koda, T. Ishida, H. Tachida, B. Wang, H. Pang, M. Soejima, and H. Kimura, DNA sequence variation of the human ABO-Secretor locus (FUT2) in New Guinean populations: possible early human migration from Africa., Human Genetics, 113, 6, 113: 534-541., 2003.11.
41. T. Kado, H. Yoshimaru, Y. Tsumura and H. Tachida., DNA variation in a conifer tree, Cryptomeria japonica (Cupressaceae sensu lato)., Genetics, 164: 1547-1559., 2003.08.
42. M. Iizuka, H. Tachida and H. Matsuda, Neutral Model under Random Environments., Genetics, 161: 381-388., 2002.01.
43. J. Kusumi, Y. Tsumura, H. Yoshimaru and H. Tachida, Molecular evolution of nuclear genes in Cupressacea, a group of conifer trees., Mol. Biol. Evol., 19, 5, 19(5):736-747., 2002.05.
44. Y. Koda, H. Tachida, H. Pang, Y. Liu, M. Soejima, A. A. Ghaderi, O. Takenaka and Hi. Kimura, Contrasting Patterns of Polymorphisms at ABO-Secretor Gene (FUT2) and Plasma a(1,3)Fucosyltransferase Gene (FUT6)., Genetics, 158, 2, 158: 747-756., 2001.01.
45. K. Miyake, H. Tachida, Y. Ohshima, R. Arai, S. Kimura, N. Imada and T. Honjo, Genetic variation at the cytochrome b locus in the rosi bittering, Rhodeus ocellatus (Cyprinidae) in Japan., Ichthyol. Res., 48: 105-110., 2001.01.
46. H. Tachida, DNA evolution under weak selection., Gene, 261, 1, 261: 3-9, 2000.12.
47. J. Kusumi, Y. Tsumura, H. Yoshimaru and H. Tachida, Phylogenetic relationships in Taxodiaceae and Cupressaceae based on the matK, chlL, trnL-trnF IGS region and trnL intoron sequences., Am. J. Bot., 87, 10, 87: 1480-1488., 2000.01.
48. A. Koga, A. Shimada, A. Shima, M. Sakaizumi, H. Tachida and H. Hori, Evidence of recent invasion of Medaka fish genome by the Tol2 transposable element., Genetics, 155: 273-281., 2000.01.
49. Y. Koda, H. Tachida, M. Soejima, O. Takenaka and H. Kimura, The very old (ancient) origin of a null allele se428 of the human ABO-secretor locus (FUT2)., J. Mol. Evol., 50(3) : 243-248., 2000.03.
50. H. Tachida, Molecular evolution in multisite nearly neutral mutation model., J. Mol. Evol., 50, 1, 50(1): 69-81., 2000.01.
51. H. Tachida and T. Kuboyama, Evolution of Multigene familes by gene duplication: a haploid model., Genetics, 149, 4, Genetics 149: 2147-2158, 1998.01.
52. T. Kajita, K. Kamiya, K. Nakamura, H. Tachida, R. Wcikneswari, Y. Tsumura, H. Yoshimaru and T. Yamazaki, Molecular phylogeny of Diperocarpaceae in Southeast Asia based on nucleotide sequences of matK, trnL intron and trnL-trnF intergenic spacer region in chrolplast DNA., Mol. Phyl. Evol., 10, 2, 10(2): 202-209, 1998.10.