Kyushu University Academic Staff Educational and Research Activities Database
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Fumihide Shiraishi Last modified date:2019.05.29



Graduate School
Undergraduate School


E-Mail
Homepage
http://www.brs.kyushu-u.ac.jp/~biopro/
Academic Degree
Doctor of engineering
Field of Specialization
Chemical Reaction Engineering, Metabolic Reaction Engineering, Numerical Calculation, Environmental Engineering in Closed Ecological Systems
Research
Research Interests
  • Photocatalytic decomposition of ethylene
    keyword : photocatalysis, ethylene, reactor, air purification, agricultural product
    2017.04~2020.03.
  • Purification of water and air using carbonized rice husk
    keyword : water and air treatment, carbonized rice husk, ammonia
    2016.04~2020.03Development of high-performance water purification systems using immobilized photocatalyst under sunlight irradiation.
  • A method of mathematical modeling for chemical reaction phenomena with mass transfer
    keyword : Mathematical modeling, Chemical reactor, Mass transfer
    2012.04~2020.03.
  • Development of photocatalytic reaction processes for treatment of water
    keyword : photocatalyst, water treatment, tap water, waste water
    2006.04~2020.03Development of high-performance water purification systems using immobilized photocatalyst under sunlight irradiation.
  • Photocatalytic purification of air containing VOCs
    keyword : photocatalyst, air purification, sick-house syndrome, volatile organic compounds, ethylene decomposition, CO oxidation
    2005.04~2019.03Development of high-performance environmental purofication systems containing photocatalytic treatment. Development of air-purification systems.
  • Analysis of large-scale metabolic reaction systems
    keyword : Biochemical systems theory. Taylor series method, bioinformatics
    2005.04~2020.03Development of a method for analysis of large-scale metabolic reaction systems. Development of numerical methods of superhigh-order accuracy based on Taylor-series method..
Academic Activities
Papers
1. Atsuko Kuwakado, Soichiro Komori, Fumihide Shiraishi, A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network Models, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 30, DOI: 10.1109/TCBB.2018.2853724, 2018.07.
2. Atsuko Kuwakado, Fumihide Shiraishi, Software for drawing a network chart using steady-state sensitivity data and its application to analysis of metabolic reaction networks, Eco-Engineering, 30, 3, 73-79, 2018.06.
3. Masami Hirai, Fumihide Shiraishi, Using metabolome data for mathematical modeling of plant metabolic systems, Current Opinion in Biotechnology, 54, 138-144, 2018.07.
4. Michio Iwata, Atsuko Miyawaki-Kuwakado, Erika Yoshida, Soichiro Komori, Fumihide Shiraishi, Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model, Mathematical Biosciences, 301, 21-31, 2018.07.
5. Shunya Taira, Fumihide Shiraishi, Low-cost preparation of ammonium ion adsorbent using carbonized rice husk, Eco-Engineering, 29, 3, 87-92, 2017.07.
6. Katsuya Kido, Rumi Chand, Fumihide Shiraishi, Photocatalytic wastewater treatment accelerated by water evaporation, Eco-Engineering, 29, 3, 81-86, 2017.07.
7. Yuta Tanoue, Fumihide Shiraishi, A simple and economical preparation of a TiO2-coating solution by hydrothermal reaction, Eco-Engineering, 29, 2, 39-44, 2017.04.
8. Masatsugu Yamada, Masashi Iwanaga, Kansuporn Sriyudthsak, Mayumi Yokota Hirai, Fumihide Shiraishi, Investigation of kinetic-order sensitivities in metabolic reaction networks, Journal of Theoretical Biology, 415, 32-40, 2017.01.
9. Fumihide Shiraishi, Daichi Maruoka, Yuta Tanoue, A better UV light and TiO2-PET sheet arrangement for enhancing photocatalytic decomposition of volatile organic compounds, Separation and Purification Technology, 175, 185-193, 2017.01.
10. Atsuko Miyawaki, Kansuporn Sriyudthsak, Masami Yokota Hirai, Fumihide Shiraishi, A new parametric method to smooth time-series data of metabolites in metabolic networks, Mathematical Biosciences, 282, 21-33, 2016.09.
11. Kansuporn Sriyudthsak, Fumihide Shiraishi, Masami Y. Hirai, Mathematical modeling and dynamic simulation of metabolic reaction systems using metabolime time series data, Frontiers in Molecular Biosciences, 3, 15, 1-11, 2016.05.
12. Atsuko Miyawaki, Shunya Taira, Fumihide Shiraishi, Performance of continuous stirred-tank reactors connected in series as a photocatalytic reactor system, Journal of Chemical Engineering, 286, 594-601, 2016.01.
13. Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Eberhard O. Voit, Fumihide Shiraishi, Masami Y. Hirai, A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network, BMC Systems Biology, 8 (Suppl 5), S4, 2014.12.
14. Fumihide Shiraishi, 宮脇 温子, Rumi Chand, A mechanism of the photocatalytic decomposition of 2,4-dinitrophenol on TiO2 immobilized on a glass surface, Chemical Engineering Journal, 262, 831-838, 2015.01.
15. Kansuporn Sriyudthsak, Michio Iwata, Masami Yokota Hirai, Fumihide Shiraishi, PENDISC: A simple method for constructing a mathematical model from time-series data of metabolite concentrations, Bulletin of Mathematical Biology, 10.1007/s11538-014-9960-8, 76, 1333-1351, 2014.05.
16. Michio Iwata, Kansuporn Sriyudthsak, Masami Yokota Hirai, Fumihide Shiraishi, Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton–Raphson method, Mathematical Biosciences, 248, 11-21, 2014.01.
17. Rumi Chand, Fumihide Shiraishi, Reaction mechanism of photocatalytic decomposition of 2,4-dinitrophenol in aqueous suspension of TiO2 fine particles, Chemical Engineering Journal, 233, 369-376, 2013.08.
18. Michio Iwata, Fumihide Shiraishi, Eberhard O. Voit, Coarse but efficient identification of metabolic pathway systems, International Journal of Systems Biology, 4, 1, 57-72, 2013.08.
19. Fumihide Shiraishi, Mariko Ueno, Rumi Chand, Yuichiro Shibata, Hom Nath Luitel, Effect of silanization of titanium dioxide on photocatalytic decomposition of 2,4-dinitropheonol under irradiation with artificial UV light and sunlight, Journal of Chemical Technology and Biotechnology, 89, 81-87, 2013.04.
20. Jarin Akhter, Fumihide Shiraishi, The dynamic behavior of methionine metabolism cycle in human liver cell, International Journal of Computational and Applied Mathematics, 8, 1, 37-44, 2013.04.
21. Kansuporn Sriyudthasak, Fumihide Shiraishi, Masami Hirai, Identification of a metabolic reaction network from time-series data of metabolite concentrations, PLOS One, 8, 1, 1-9, 2013.01.
22. Fumihide Shiraishi, Masaaki Egashira, Michio Iwata, Kansporn Sriyudthsak, Kenji Hattori, Highly reliable computation of dynamic sensitivities in metabolic reaction systems by a variable-step Taylor series method, Asia-Pacific J. Chem. Eng., 7, S32-S38, 2012.05.
23. Fumihide Shiraishi, Naoya Kamikariya, Yuichiro Shibata, Photocatalytic decomposition of gaseous HCHO over a titanium dioxide film formed on a hydrophobic PET sheet, J. Chem. Technol. Biotechnol., 86, 852-857, 2011.05.
24. Fumihide Shiraishi, Masaaki Egashira, Michio Iwata, Highly accurate computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method, Math. Biosci., 233, 59-67, 2011.05.
25. Xiangyu Cao, Fumihide Shiraishi, A mechanism of photocatalytic and adsorptive treatment of 2,4-dinitrophenol on
a porous thin film of TiO2 covering granular activated carbon particles, The 13th Asia Pacific Confederation of Chemical Engineering Congress (APCChE 2010) , 160, 651–659, 2010.09.
26. Fumihide Shiraishia, Michio Iwata, Masaaki Egashira, Kansuporn Sriyudthsak, and Kenji Hattori, A highly reliable computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method, The 13th Asia Pacific Confederation of Chemical Engineering Congress (APCChE 2010) , 2010.10.
27. K. Sriyudthsak and F. Shiraishi, Selection of Best Indicators for Ranking and Determination of Bottleneck Enzymes in Metabolic Reaction Systems, Ind. Eng. Chem. Res., 49, 9738-9742 , 2010.05.
28. K. Sriyudthsak and F. Shiraishi, Investigation of the performance of fermentation processes using a mathematical model including effects of metabolic bottleneck and toxic product on cells, Math. Biosci., 228, 1-9, 2010.05.
29. X. Cao, Y. Oda, and F. Shiraishi, Photocatalytic and adsorptive treatment of 2,4-dinitrophenol using a TiO2 film covering activated carbon surface, Chem. Eng. J., 156, 98–105, 2010.01.
30. K. Sriyudthsak and F. Shiraishi, Identification of bottleneck enzymes with negative dynamic sensitivities: ethanol fermentation systems as case studies, J. Biotechnol., 2010.07.
31. K. Sriyudthsak and F. Shiraishi, Instantaneous and overall indicators for determination of bottleneck ranking in metabolic reaction networks, Ind. Eng. Chem. Res., 49, 2122–2129, 2010.05.
32. F. Shiraishi, K. Sriyudthsak, and Y. Suzuki, Calculation errors of time-varying flux control coefficients obtained from elasticity coefficients by means of summation and connectivity theorems in Metabolic Control Analysis, Math. Biosci., 223, 105–114, 2010.02.
33. A. A. Berrada, H. Kenji, and F. Shiraishi, Alternative physical meanings of dynamic sensitivity in steady-state metabolic reaction networks, Eco-Engineering, 22, 13-18, 2010.01.
34. F. Shiraishi, T. Tomita, M. Iwata, A. A. Berrada, and H. Hirayama, A reliable Taylor series-based computational method for the calculation of dynamic sensitivities in large-scale metabolic reaction systems: Algorithm and software evaluation, Math. Biosci., 222, 73–85, 2009.08.
35. Aziz A. Berrada, Tomofumi Tomita, Hiroshi Hirayama, Fumihide Shiraishi, Simplification of A Radical Reaction Model Based on Dynamic Sensitivity Analysis: Evaluation of SoftCADS Performance, 2009.05.
36. Fumihide Shiraishi, Takaaki Ishimatsu, Toluene removal from indoor air using a miniaturized photocatalytic air purifier including a preceding adsorption/desorption unit, Chemical Engineering Jounal, 2009.05.
37. Fumihide Shiraishi, Shotaro Ikedab, Naoya Kamikariya, Photocatalytic decompositions of gaseous HCHO over thin films of anatase titanium oxide converted from amorphous in a heated air and in an aqueous solution of hydrogen peroxide, Chemical Engineering Journal, 2008.11.
38. Fumihide Shiraishi, Yusuke Suzuki, Method for Determination of the Main Bottleneck Enzyme in a Metabolic Reaction Network by Dynamic Sensitivity Analysis, Industrial & Engineering Chemistry Research, 48, 1, 415-423, 2008.12.
39. Fumihide Shiraishi, Kenji Hattori, Hiroshi Hirayama, Comparisons of the performances of three methods for dynamic sensitivity computation, 10th International Conference on Molecular Systems Biology (ICMSB 2008) , 2008.02.
40. Fumihide Shiraishi, Yusuke Suzuki, Determination of bottleneck enzymes in a metabolic reaction system by dynamic sensitivity analysis, 10th International Conference on Molecular Systems Biology (ICMSB 2008) , 2008.02.
41. F. Shiraishi, T. Ishimatsu, K. Tateishi, H. Shima, H. Yamamoto, Rapid treatment of trace toluene in air with an air cleaner consisting of a continuous adsorption and desorption concentrator and photocatalytic reactor with a parallel array of nine light sources, European Congress of Chemical Engineering (ECCE-6), 2007.09.
42. F. Shiraishi, T. Itoh, Y. Oda, H. Nagayoshi, T. Higuchi, K. Tateishi, Photocatalytic reactivity of the titanium oxide loaded on a stainless steel screen by a spraying method, European Congress of Chemical Engineering (ECCE-6), 2007.09.
43. J. Akhter, F. Shiraishi, Scanning a clover plant population model by biochemical systems theory: 2. dynamic sensitivity analysis, Eco-Engineering, 19 (3), 159-166, 2007.05.
44. J. Akhter, F. Shiraishi, Scanning a clover plant population model by biochemical systems theory: 1. steady-state sensitivity analysis, Eco-Engineering, 19 (3), 159-166, 2007.05.
45. F. Shiraishi and Y. Hatoh, Dynamic sensitivities in chaotic dynamical systems, Appl. Math. Comput., 186, 1347–1359, 2007.03.
46. F. Shiraishi, T. Nomura, S. Yamaguchi, and Y. Ohbuchi, Rapid removal of trace HCHO from indoor air by an air purifier consisting of a continuous concentrator and photocatalytic reactor and its computer simulation, Chem. Eng. J., 12, 157–165, 2007.01.
47. Fumihide Shiraishi, Shingo Furuta, Takaaki Ishimatsu, Jarin Akhter, A simple and highly accurate numerical differentiation method
for sensitivity analysis of large-scale metabolic reaction systems, Mathematical Biosciences, 208, 590–606, 2007.05.
48. Fumihide Shiraishi, Mayumi Nagano, Shinpon Wang, Characterization of a photocatalytic reaction in a continuous-flow recirculation reactor system, J. Chem. Technol. Biotechnol., 81巻, 1039-1048頁, 2006.05.
49. Fumihide Shiraishi, Kentaro Toyoda, and Hiromitsu Miyakawa, Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 2. Reactor performance, Chem. Eng. J., 10.1016/j.cej.2005.09.008, 114, 1-3, 145-151, 114巻,145–151頁, 2005.11.
50. Fumihide Shiraishi, Daisuke Ohkubo, Kentaro Toyoda, Shunsuke Yamaguchi, Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 1. Fundamental experiment for reactor design, Chem. Eng. J., 10.1016/j.cej.2005.09.009, 114, 1-3, 153-159, 114巻, 153–159頁, 2005.11.
51. Fumihide Shiraishi, Yuji Hatoh, Toshinori Irie, An efficient method for calculation of dynamic logarithmic gains in biochemiclal systems theory, Journal of Theoretical Biology, 234巻、79-85頁, 2005.04.
Works, Software and Database
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Presentations
1. Atsuko Miyawaki-Kuwakado, Soichiro Komori, Fumihide Shiraishi, Development of software for calculating metabolite concentrations and sensitivities at a steady-state efficiently and accurately, International Conference on Molecular Systems Biology 2017, 2017.07.
2. Atsuko Miyawaki-Kuwakado, Fumihide Shiraishi, A reasonable way to characterize metabolic reaction networks by connecting sensitivity values with respect to metabolite concentrations and fluxes, Eco-Engineering Symposium 2017: Application of Technology for Sustainability of Natural Resources, 2017.07.
3. Fumihide Shiraishi, Photocatalytic purifications of air contaminated with various kinds of chemical compounds, Eco-Engineering Symposium 2017: Application of Technology for Sustainability of Natural Resources, 2017.07.
4. Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Ayuko Kuwahara, Shigehiko Kanaya, Toru Fujiwara, Hitoshi Onouchi, Satoshi Naito, Fumihide Shiraishi, Masami Hirai, A combined approach for constructing a large-scale in vivo kinetic model using a limited number of metabolite concentrations, International Symposium on Synthetic Systems Biology: Synthetic Metabolic Pathway, Mathematical System Analysis and Design of Bio-inspired System Joint 14th Symposium of Biochemical Systems Theory (BST2015), 2015.09.
5. Masatsugu Yamada, Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Hitoshi Onouchi, Satoshi Naito, Masami Hirai, Fumihide Shiraishi, Investigation of connectivity and interaction in a metabolic reaction network using metabolome data, International Symposium on Synthetic Systems Biology: Synthetic Metabolic Pathway, Mathematical System Analysis and Design of Bio-inspired System Joint 14th Symposium of Biochemical Systems Theory (BST2015), 2015.09.
6. Atsuko Miyawaki, Kansuporn Sriyudthsak, Masami Hirai, Fumihide Shiraishi, A method for smoothing time-course data of metabolite concentrations in metabolic reaction network systems, International Symposium on Synthetic Systems Biology: Synthetic Metabolic Pathway, Mathematical System Analysis and Design of Bio-inspired System Joint 14th Symposium of Biochemical Systems Theory (BST2015), 2015.09.
7. Kansuporn SRIYUDTHSAK, 澤田有司, 千葉由佳子, 山下由衣, 金谷重彦, 尾之内均, 藤原徹, 内藤哲, Eberhard O. Voit, 白石 文秀, 平井優美, U–system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network, GIW ISCB-ASIA 2014, 2014.12.
8. Kansuporn SRIYUDTHSAK, 澤田有司, 千葉由佳子, 山下由衣, 金谷重彦, 尾之内均, 藤原徹, 内藤哲, Eberhard O. Voit, 白石 文秀, 平井優美, Prediction of the dynamic behavior of metabolite concentrations in a large-scale pathway system, Metabolomics 2014, 2014.06.
Educational
Educational Activities
1) Lecturer at Graduate School of Nioresource and Bioenvironmental Sciences and School of Agriculture, Kyushu University
2) Part-time lecturer at Department of Chemical and Biological Engineering, Sasebo College of Technology; Enzyme Enginnering for fifth-grade students