1. |
Atsuko Kuwakado, Soichiro Komori, Fumihide Shiraishi, A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network Models, *IEEE/ACM Transactions on Computational Biology and Bioinformatics*, 30, DOI: 10.1109/TCBB.2018.2853724, 2018.07. |

2. |
Atsuko Kuwakado, Fumihide Shiraishi, Software for drawing a network chart using steady-state sensitivity data and its application to analysis of metabolic reaction networks, *Eco-Engineering*, 30, 3, 73-79, 2018.06. |

3. |
Masami Hirai, Fumihide Shiraishi, Using metabolome data for mathematical modeling of plant metabolic systems, *Current Opinion in Biotechnology*, 54, 138-144, 2018.07. |

4. |
Michio Iwata, Atsuko Miyawaki-Kuwakado, Erika Yoshida, Soichiro Komori, Fumihide Shiraishi, Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model, *Mathematical Biosciences*, 301, 21-31, 2018.07. |

5. |
Shunya Taira, Fumihide Shiraishi, Low-cost preparation of ammonium ion adsorbent using carbonized rice husk, *Eco-Engineering*, 29, 3, 87-92, 2017.07. |

6. |
Katsuya Kido, Rumi Chand, Fumihide Shiraishi, Photocatalytic wastewater treatment accelerated by water evaporation, *Eco-Engineering*, 29, 3, 81-86, 2017.07. |

7. |
Yuta Tanoue, Fumihide Shiraishi, A simple and economical preparation of a TiO_{2}-coating solution by hydrothermal reaction, *Eco-Engineering*, 29, 2, 39-44, 2017.04. |

8. |
Masatsugu Yamada, Masashi Iwanaga, Kansuporn Sriyudthsak, Mayumi Yokota Hirai, Fumihide Shiraishi, Investigation of kinetic-order sensitivities in metabolic reaction networks, *Journal of Theoretical Biology*, 415, 32-40, 2017.01. |

9. |
Fumihide Shiraishi, Daichi Maruoka, Yuta Tanoue, A better UV light and TiO2-PET sheet arrangement for enhancing photocatalytic decomposition of volatile organic compounds, *Separation and Purification Technology*, 175, 185-193, 2017.01. |

10. |
Atsuko Miyawaki, Kansuporn Sriyudthsak, Masami Yokota Hirai, Fumihide Shiraishi, A new parametric method to smooth time-series data of metabolites in metabolic networks, *Mathematical Biosciences*, 282, 21-33, 2016.09. |

11. |
Kansuporn Sriyudthsak, Fumihide Shiraishi, Masami Y. Hirai, Mathematical modeling and dynamic simulation of metabolic reaction systems using metabolime time series data, *Frontiers in Molecular Biosciences*, 3, 15, 1-11, 2016.05. |

12. |
Atsuko Miyawaki, Shunya Taira, Fumihide Shiraishi, Performance of continuous stirred-tank reactors connected in series as a photocatalytic reactor system, *Journal of Chemical Engineering*, 286, 594-601, 2016.01. |

13. |
Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba, Yui Yamashita, Shigehiko Kanaya, Hitoshi Onouchi, Toru Fujiwara, Satoshi Naito, Eberhard O. Voit, Fumihide Shiraishi, Masami Y. Hirai, A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network, *BMC Systems Biology*, 8 (Suppl 5), S4, 2014.12. |

14. |
Fumihide Shiraishi, 宮脇 温子, Rumi Chand, A mechanism of the photocatalytic decomposition of 2,4-dinitrophenol on TiO2 immobilized on a glass surface, *Chemical Engineering Journal*, 262, 831-838, 2015.01. |

15. |
Kansuporn Sriyudthsak, Michio Iwata, Masami Yokota Hirai, Fumihide Shiraishi, PENDISC: A simple method for constructing a mathematical model from time-series data of metabolite concentrations, *Bulletin of Mathematical Biology*, 10.1007/s11538-014-9960-8, 76, 1333-1351, 2014.05. |

16. |
Michio Iwata, Kansuporn Sriyudthsak, Masami Yokota Hirai, Fumihide Shiraishi, Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton–Raphson method, *Mathematical Biosciences*, 248, 11-21, 2014.01. |

17. |
Rumi Chand, Fumihide Shiraishi, Reaction mechanism of photocatalytic decomposition of 2,4-dinitrophenol in aqueous suspension of TiO2 fine particles, *Chemical Engineering Journal*, 233, 369-376, 2013.08. |

18. |
Michio Iwata, Fumihide Shiraishi, Eberhard O. Voit, Coarse but efficient identification of metabolic pathway systems, *International Journal of Systems Biology*, 4, 1, 57-72, 2013.08. |

19. |
Fumihide Shiraishi, Mariko Ueno, Rumi Chand, Yuichiro Shibata, Hom Nath Luitel, Effect of silanization of titanium dioxide on photocatalytic decomposition of 2,4-dinitropheonol under irradiation with artificial UV light and sunlight, *Journal of Chemical Technology and Biotechnology*, 89, 81-87, 2013.04. |

20. |
Jarin Akhter, Fumihide Shiraishi, The dynamic behavior of methionine metabolism cycle in human liver cell, *International Journal of Computational and Applied Mathematics*, 8, 1, 37-44, 2013.04. |

21. |
Kansuporn Sriyudthasak, Fumihide Shiraishi, Masami Hirai, Identification of a metabolic reaction network from time-series data of metabolite concentrations, *PLOS One*, 8, 1, 1-9, 2013.01. |

22. |
Fumihide Shiraishi, Masaaki Egashira, Michio Iwata, Kansporn Sriyudthsak, Kenji Hattori, Highly reliable computation of dynamic sensitivities in metabolic reaction systems by a variable-step Taylor series method, *Asia-Pacific J. Chem. Eng.*, 7, S32-S38, 2012.05. |

23. |
Fumihide Shiraishi, Naoya Kamikariya, Yuichiro Shibata, Photocatalytic decomposition of gaseous HCHO over a titanium dioxide film formed on a hydrophobic PET sheet, *J. Chem. Technol. Biotechnol.*, 86, 852-857, 2011.05. |

24. |
Fumihide Shiraishi, Masaaki Egashira, Michio Iwata, Highly accurate computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method, *Math. Biosci.*, 233, 59-67, 2011.05. |

25. |
Xiangyu Cao, Fumihide Shiraishi, A mechanism of photocatalytic and adsorptive treatment of 2,4-dinitrophenol on a porous thin film of TiO2 covering granular activated carbon particles, *The 13th Asia Pacific Confederation of Chemical Engineering Congress (APCChE 2010)
*, 160, 651–659, 2010.09. |

26. |
Fumihide Shiraishia, Michio Iwata, Masaaki Egashira, Kansuporn Sriyudthsak, and Kenji Hattori, A highly reliable computation of dynamic sensitivities in metabolic reaction systems by a Taylor series method, *The 13th Asia Pacific Confederation of Chemical Engineering Congress (APCChE 2010)
*, 2010.10. |

27. |
K. Sriyudthsak and F. Shiraishi, Selection of Best Indicators for Ranking and Determination of Bottleneck Enzymes in Metabolic Reaction Systems, *Ind. Eng. Chem. Res.*, 49, 9738-9742 , 2010.05. |

28. |
K. Sriyudthsak and F. Shiraishi, Investigation of the performance of fermentation processes using a mathematical model including effects of metabolic bottleneck and toxic product on cells, *Math. Biosci.*, 228, 1-9, 2010.05. |

29. |
X. Cao, Y. Oda, and F. Shiraishi, Photocatalytic and adsorptive treatment of 2,4-dinitrophenol using a TiO2 film covering activated carbon surface, *Chem. Eng. J.*, 156, 98–105, 2010.01. |

30. |
K. Sriyudthsak and F. Shiraishi, Identification of bottleneck enzymes with negative dynamic sensitivities: ethanol fermentation systems as case studies, *J. Biotechnol.*, 2010.07. |

31. |
K. Sriyudthsak and F. Shiraishi, Instantaneous and overall indicators for determination of bottleneck ranking in metabolic reaction networks, *Ind. Eng. Chem. Res.*, 49, 2122–2129, 2010.05. |

32. |
F. Shiraishi, K. Sriyudthsak, and Y. Suzuki, Calculation errors of time-varying flux control coefficients obtained from elasticity coefficients by means of summation and connectivity theorems in Metabolic Control Analysis, *Math. Biosci.*, 223, 105–114, 2010.02. |

33. |
A. A. Berrada, H. Kenji, and F. Shiraishi, Alternative physical meanings of dynamic sensitivity in steady-state metabolic reaction networks, *Eco-Engineering*, 22, 13-18, 2010.01. |

34. |
F. Shiraishi, T. Tomita, M. Iwata, A. A. Berrada, and H. Hirayama, A reliable Taylor series-based computational method for the calculation of dynamic sensitivities in large-scale metabolic reaction systems: Algorithm and software evaluation, *Math. Biosci.*, 222, 73–85, 2009.08. |

35. |
Aziz A. Berrada, Tomofumi Tomita, Hiroshi Hirayama, Fumihide Shiraishi, Simplification of A Radical Reaction Model Based on Dynamic Sensitivity Analysis: Evaluation of SoftCADS Performance, 2009.05. |

36. |
Fumihide Shiraishi, Takaaki Ishimatsu, Toluene removal from indoor air using a miniaturized photocatalytic air purifier including a preceding adsorption/desorption unit, *Chemical Engineering Jounal*, 2009.05. |

37. |
Fumihide Shiraishi, Shotaro Ikedab, Naoya Kamikariya, Photocatalytic decompositions of gaseous HCHO over thin films of anatase titanium oxide converted from amorphous in a heated air and in an aqueous solution of hydrogen peroxide, *Chemical Engineering Journal*, 2008.11. |

38. |
Fumihide Shiraishi, Yusuke Suzuki, Method for Determination of the Main Bottleneck Enzyme in a Metabolic Reaction Network by Dynamic Sensitivity Analysis, *Industrial & Engineering Chemistry Research*, 48, 1, 415-423, 2008.12. |

39. |
Fumihide Shiraishi, Kenji Hattori, Hiroshi Hirayama, Comparisons of the performances of three methods for dynamic sensitivity computation, *10th International Conference on Molecular Systems Biology (ICMSB 2008)
*, 2008.02. |

40. |
Fumihide Shiraishi, Yusuke Suzuki, Determination of bottleneck enzymes in a metabolic reaction system by dynamic sensitivity analysis, *10th International Conference on Molecular Systems Biology (ICMSB 2008)
*, 2008.02. |

41. |
F. Shiraishi, T. Ishimatsu, K. Tateishi, H. Shima, H. Yamamoto, Rapid treatment of trace toluene in air with an air cleaner consisting of a continuous adsorption and desorption concentrator and photocatalytic reactor with a parallel array of nine light sources, *European Congress of Chemical Engineering (ECCE-6)*, 2007.09. |

42. |
F. Shiraishi, T. Itoh, Y. Oda, H. Nagayoshi, T. Higuchi, K. Tateishi, Photocatalytic reactivity of the titanium oxide loaded on a stainless steel screen by a spraying method, *European Congress of Chemical Engineering (ECCE-6)*, 2007.09. |

43. |
J. Akhter, F. Shiraishi, Scanning a clover plant population model by biochemical systems theory: 2. dynamic sensitivity analysis, *Eco-Engineering*, 19 (3), 159-166, 2007.05. |

44. |
J. Akhter, F. Shiraishi, Scanning a clover plant population model by biochemical systems theory: 1. steady-state sensitivity analysis, *Eco-Engineering*, 19 (3), 159-166, 2007.05. |

45. |
F. Shiraishi and Y. Hatoh, Dynamic sensitivities in chaotic dynamical systems, *Appl. Math. Comput.*, 186, 1347–1359, 2007.03. |

46. |
F. Shiraishi, T. Nomura, S. Yamaguchi, and Y. Ohbuchi, Rapid removal of trace HCHO from indoor air by an air purifier consisting of a continuous concentrator and photocatalytic reactor and its computer simulation, *Chem. Eng. J.*, 12, 157–165, 2007.01. |

47. |
Fumihide Shiraishi, Shingo Furuta, Takaaki Ishimatsu, Jarin Akhter, A simple and highly accurate numerical differentiation method for sensitivity analysis of large-scale metabolic reaction systems, *Mathematical Biosciences*, 208, 590–606, 2007.05. |

48. |
Fumihide Shiraishi, Mayumi Nagano, Shinpon Wang, Characterization of a photocatalytic reaction in a continuous-flow recirculation reactor system, *J. Chem. Technol. Biotechnol.*, 81巻, 1039-1048頁, 2006.05. |

49. |
Fumihide Shiraishi, Kentaro Toyoda, and Hiromitsu Miyakawa, Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 2. Reactor performance, *Chem. Eng. J.*, 10.1016/j.cej.2005.09.008, 114, 1-3, 145-151, 114巻,145–151頁, 2005.11. |

50. |
Fumihide Shiraishi, Daisuke Ohkubo, Kentaro Toyoda, Shunsuke Yamaguchi, Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 1. Fundamental experiment for reactor design, *Chem. Eng. J.*, 10.1016/j.cej.2005.09.009, 114, 1-3, 153-159, 114巻, 153–159頁, 2005.11. |

51. |
Fumihide Shiraishi, Yuji Hatoh, Toshinori Irie, An efficient method for calculation of dynamic logarithmic gains in biochemiclal systems theory, *Journal of Theoretical Biology*, 234巻、79-85頁, 2005.04. |