Updated on 2024/11/15

Information

 

写真a

 
ATSUTA YUJI
 
Organization
Faculty of Science Department of Biology Lecturer
School of Sciences Department of Biology(Concurrent)
Graduate School of Systems Life Sciences Department of Systems Life Sciences(Concurrent)
Title
Lecturer
Contact information
メールアドレス
Tel
0928026556
Profile
2023年度の主な活動内容は以下の通りである。 1)研究成果発表・・・研究成果を招待講演や国内学会研究会にて3度発表した(NIBBセミナー、分子生物学会、ユニーク会)。また、私が責任著者、筆頭著者として原著論文2報を出版することができた(Suzuki et al., Cells & Dev., 2023; Atsuta et al., Dev. Cell, 2024)。このうちSuzukiらの論文は指導した大学院生が筆頭著者として貢献し作成した論文である。 2)教育について・・・研究室においては新たに2名の卒研生を受け入れ、共に卒業研究にて良好な成績を収めた。この2名はシス生大学院課程に進学し、継続して指導している。また授業について、2023年度は以下の科目を担当し、精力的に講義・実習指導を行なった【学部授業】生命の科学A、応用分子生物学実習、自然科学総合実験(分担)、発生生物学(分担)、分子発生学(分担)、生物科学演習(分担) 【大学院授業】システム生命科学特別演習I、システム生命科学特別演習II、システム生命科学特別研究、学際開拓創成セミナーI、学際開拓創成セミナーII、生物科学I(分担)、生物科学特論(分担)

Research Areas

  • Life Science / Developmental biology

Degree

  • PhD in Developmental Biology

Research History

  • Kyushu University Faculty of Sciences Lecturer 

    2022.10 - Present

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  • Kyushu University Faculty of Sciences Assistant Professor 

    2020.3 - 2022.9

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  • 2003.4.1-2008.3.31 協和発酵工業株式会社 医薬営業部   

    2003.4.1-2008.3.31 協和発酵工業株式会社 医薬営業部

  • 2013.4.1-2015.3.31 京都大学大学院理学研究科 博士研究員 2015.4.1-2020.2.29 ハーバード医科大学遺伝学研究科 博士研究員   

Research Interests・Research Keywords

  • Research theme: Membrane potential

    Keyword: Membrane potential

    Research period: 2024

  • Research theme: Sternal development

    Keyword: Sternal development

    Research period: 2024

  • Research theme: Limb development

    Keyword: Limb development

    Research period: 2024

  • Research theme: Cellular reprogramming

    Keyword: Cellular reprogramming

    Research period: 2024

  • Research theme: オルガノイド

    Keyword: オルガノイド

    Research period: 2024

  • Research theme: Study for vertebrate limb development -Cellular reprogramming of limb progenitors -Making limb bud-like organoids -Bioelectric signals in limb development -Dissecting mechanisms underlying drug teratogenicity by using limb buds Genetic and epigenetic mechanisms underlying diversity of sternum shapes between species

    Keyword: Limb development/regeneration, Direct reprogramming, Organoid, Membrane potential, Sternum development, Keel

    Research period: 2020.3

Awards

  • JSDB Frontiers Prize

    2024.6   Japanese Society of Developmental Biologists  

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  • NAIST賞(最優秀修了生)

    2013.3   奈良先端科学技術大学院大学   管組織形成機構に関する研究

  • 若手優秀プレゼンテーション賞

    2012.5   日本発生生物学会、日本細胞生物学会   生体内における管組織形成機構に関する研究

  • Beverly Kerr McKinnell Award (最優秀ポスター賞)

    2010.10   International society for differentiation   生体内の管組織形成機構に関する研究

  • 優秀学生ポスター賞

    2010.8   Society for developmental biology   ウォルフ管をモデルとした管組織形成機構に関する研究。2位。

Papers

  • Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors Reviewed International journal

    Yuji Atsuta, ChangHee Lee, Alan R Rodrigues, Charlotte Colle, Reiko R Tomizawa, Ernesto G Lujan, Patrick Tschopp, Laura Galan, Meng Zhu, Joshua M Gorham, Jean-Pierre Vannier, Christine E Seidman, Jonathan G Seidman, Marian A Ros, Olivier Pourquié, Clifford J Tabin

    Developmental Cell   59 ( 3 )   415 - 430   2024.2   ISSN:1534-5807 eISSN:1878-1551

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Developmental Cell  

    The early limb bud consists of mesenchymal limb progenitors derived from the lateral plate mesoderm (LPM). The LPM also gives rise to the mesodermal components of the flank and neck. However, the cells at these other levels cannot produce the variety of cell types found in the limb. Taking advantage of a direct reprogramming approach, we find a set of factors (Prdm16, Zbtb16, and Lin28a) normally expressed in the early limb bud and capable of imparting limb progenitor-like properties to mouse non-limb fibroblasts. The reprogrammed cells show similar gene expression profiles and can differentiate into similar cell types as endogenous limb progenitors. The further addition of Lin41 potentiates the proliferation of the reprogrammed cells. These results suggest that these same four factors may play pivotal roles in the specification of endogenous limb progenitors.

    DOI: 10.1016/j.devcel.2023.12.010

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  • LIN28 is essential for the maintenance of chicken primordial germ cells Reviewed International journal

    #Katsuya Suzuki*,#Seung June Kwon*, Daisuke Saito, Yuji Atsuta(Corresponding)

    Cells & Development   176   203874 - 203874   2023.7   ISSN:2667-2901

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Cells and Development  

    Understanding the mechanism of stem cell maintenance underlies the establishment of long-term and mass culture methods for stem cells that are fundamental for clinical and agricultural applications. In this study, we use chicken primordial germ cell (PGC) as a model to elucidate the molecular mechanisms underlying stem cell maintenance. The PGC is a useful experimental model because it is readily gene-manipulatable and easy to test gene function in vivo using transplantation. Previous studies to establish a long-term culture system have shown that secreted factors such as FGF2 are required to maintain the self-renewal capability of PGC. On the other hand, we know little about intracellular regulators responsible for PGC maintenance. Among representative stem cell factors, we focus on RNA-binding factors LIN28A and LIN28B as possible central regulators for the gene regulatory network essential to PGC maintenance. By taking advantage of the CRISPR/Cas9-mediated gene editing and a clonal culture technique, we find that both LIN28A and LIN28B regulate the proliferation of PGC in vitro. We further showed that colonization efficiency of grafted PGC at the genital ridges, rudiments for the gonads, of chicken embryos were significantly decreased by knockout (KO) of LIN28A or LIN28B. Of note, overexpression of human LIN28 in LIN28-KO PGC was sufficient to restore the low colonization rates, suggesting that LIN28 plays a key role in PGC colonization at the gonads. Transcriptomic analyses of LIN28-KO PGC reveal that several genes related to mesenchymal traits are upregulated, including EGR1, a transcription factor that promotes the differentiation of mesodermal tissues. Finally, we show that the forced expression of human EGR1 deteriorates replication activity and colonization efficiency of PGCs. Taken together, this work demonstrates that LIN28 maintains self-renewal of PGC by suppressing the expression of differentiation genes including EGR1.

    DOI: 10.1016/j.cdev.2023.203874

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  • Prime editing in chicken fibroblasts and primordial germ cells Reviewed International journal

    Yuji Atsuta, #Katsuya Suzuki, #Hiroko Iikawa, #Haruna Yaguchi, Daisuke Saito

    Development, Growth & Differentiation   64 ( 9 )   548 - 557   2022.11   ISSN:0012-1592 eISSN:1440-169X

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    Language:Others   Publishing type:Research paper (scientific journal)   Publisher:Wiley  

    CRISPR/Cas9-based genome editing technologies are revolutionizing developmental biology. One of the advanced CRISPR-based techniques is prime editing (PE), which enables precise gene modification in multiple model organisms. However, there has been no report of taking advantage of the PE system for gene editing in primordial germ cells (PGCs) thus far. In the current study, we describe a method to apply PE to the genome of chicken fibroblasts and PGCs. By combining PE with a transposon-mediated genomic integration, drug selection, and the single-cell culture method, we successfully generated prime-edited chicken fibroblasts and PGCs. The chicken PGC is widely used as an experimental model to study germ cell formation and as a vector for gene transfer to produce transgenic chickens. Such experimental models are useful in the developmental biology field and as potential bioreactors to produce pharmaceutical and nutritious proteins. Thus, the method presented here will provide not only a powerful tool to investigate gene function in germ cell development but also a basis for generating prime-edited transgenic birds.

    DOI: 10.1111/dgd.12823

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    Other Link: https://onlinelibrary.wiley.com/doi/full-xml/10.1111/dgd.12823

  • In ovo electroporation of chicken limb bud ectoderm Reviewed International journal

    Reiko R. Tomizawa, Clifford J. Tabin, Yuji Atsuta (corresponding author)

    Developmental Dynamics   2021.5

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  • Repeated mutation of a developmental enhancer contributed to human thermoregulatory evolution Reviewed International journal

    Daniel Aldea*, Yuji Atsuta*, Blerina Kokalari, Stephen F. Schaffner, Rexxi D. Prasasya, Adam Aharoni, Heather L. Dingwall, Bailey Warder, Yana G. Kamberov (*equal contribution)

    Proceedings of the National Academy of Sciences of the United States of America   118 ( 16 )   e2021722118   2021.4

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    Language:English   Publishing type:Research paper (international conference proceedings)  

    Humans sweat to cool their bodies and have by far the highest eccrine sweat gland density among primates. Humans’ high eccrine gland density has long been recognized as a hallmark human evolutionary adaptation, but its genetic basis has been unknown. In humans, expression of the Engrailed 1 (EN1) transcription factor correlates with the onset of eccrine gland formation. In mice, regulation of ectodermal En1 expression is a major determinant of natural variation in eccrine gland density between strains, and increased En1 expression promotes the specification ofmore eccrine glands. Here, we show that regulation of EN1 has evolved specifically on the human lineage to promote eccrine gland formation. Using comparative genomics and validation of ectodermal enhancer activity in mice, we identified a human EN1 skin enhancer, hECE18. We showed that multiple epistatically interacting derived substitutions in the human ECE18 enhancer increased its activity compared with nonhuman ape orthologs in cultured keratinocytes. Repression of hECE18 in human cultured keratinocytes specifically attenuated EN1 expression, indicating this element positively regulates EN1 in this context. In a humanized enhancer knock-in mouse, hECE18 increased developmental En1 expression in the skin to induce the formation of more eccrine glands. Our study uncovers a genetic basis contributing to the evolution of one of the most singular human adaptations and implicates multiple interacting mutations in a single enhancer as a mechanism for human evolutionary change.

    DOI: 10.1073/pnas.2021722118

  • L-type voltage-gated Ca2+ channel Ca(V)1.2 regulates chondrogenesis during limb development Invited Reviewed International journal

    Atsuta, Yuji; Tomizawa, Reiko R.; Levin, Michael; Tabin, Clifford J.

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   116 ( 43 )   21592 - 21601   2019.10

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    All cells, including nonexcitable cells, maintain a discrete transmembrane potential (V mem), and have the capacity to modulate V mem and respond to their own and neighbors' changes in V mem Spatiotemporal variations have been described in developing embryonic tissues and in some cases have been implicated in influencing developmental processes. Yet, how such changes in V mem are converted into intracellular inputs that in turn regulate developmental gene expression and coordinate patterned tissue formation, has remained elusive. Here we document that the V mem of limb mesenchyme switches from a hyperpolarized to depolarized state during early chondrocyte differentiation. This change in V mem increases intracellular Ca2+ signaling through Ca2+ influx, via CaV1.2, 1 of L-type voltage-gated Ca2+ channels (VGCCs). We find that CaV1.2 activity is essential for chondrogenesis in the developing limbs. Pharmacological inhibition by an L-type VGCC specific blocker, or limb-specific deletion of CaV1.2, down-regulates expression of genes essential for chondrocyte differentiation, including Sox9, Col2a1, and Agc1, and thus disturbs proper cartilage formation. The Ca2+-dependent transcription factor NFATc1, which is a known major transducer of intracellular Ca2+ signaling, partly rescues Sox9 expression. These data reveal instructive roles of CaV1.2 in limb development, and more generally expand our understanding of how modulation of membrane potential is used as a mechanism of developmental regulation.

    DOI: 10.1073/pnas.1908981116

  • Early formation of the Mullerian duct is regulated by sequential actions of BMP/Pax2 and FGF/Lim1 signaling Reviewed International journal

    Atsuta, Yuji; Takahashi, Yoshiko

    DEVELOPMENT   143 ( 19 )   3549 - 3559   2016.10

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    The Müllerian duct (MD) and Wolffian duct (WD) are embryonic tubular tissues giving rise to female and male reproductive tracts, respectively. In amniote embryos, both MD and WD emerge in both sexes, but subsequently degenerate in the males and females, respectively. Here, by using MD-specific gene manipulations in chicken embryos, we identify the molecular and cellular mechanisms that link early MD specification to tubular invagination. Early (pre-)specification of MD precursors in the coelomic epithelium requires BMP signaling and its downstream target Pax2 in a WD-independent process. Subsequently, the BMP/Pax2 axis induces Lim1 expression, a hallmark of MD specification, for which FGF/ERK and WD-derived signals are also required. Finally, the sequential actions of the BMP/Pax2 and FGF/Lim1 axes culminate in epithelial invagination to form a tubular structure driven by an apical constriction, where apical accumulation of phospho-myosin light chain is positively regulated by FGF/ERK signaling. Our study delineates mechanisms governing the early formation of the MD, and also serves as a model of how an epithelial cell sheet is transformed to a tubular structure, a process seen in a variety of developmental contexts.

    DOI: 10.1242/dev.137067

  • FGF8 coordinates tissue elongation and cell epithelialization during early kidney tubulogenesis Reviewed International journal

    Atsuta, Yuji; Takahashi, Yoshiko

    DEVELOPMENT   142 ( 13 )   2329   2015.7

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    Language:English   Publishing type:Research paper (scientific journal)  

    When a tubular structure forms during early embryogenesis, tubular elongation and lumen formation (epithelialization) proceed simultaneously in a spatiotemporally coordinated manner. We here demonstrate, using the Wolffian duct (WD) of early chicken embryos, that this coordination is regulated by the expression of FGF8, which shifts posteriorly during body axis elongation. FGF8 acts as a chemoattractant on the leader cells of the elongating WD and prevents them from epithelialization, whereas static ('rear') cells that receive progressively less FGF8 undergo epithelialization to form a lumen. Thus, FGF8 acts as a binary switch that distinguishes tubular elongation from lumen formation. The posteriorly shifting FGF8 is also known to regulate somite segmentation, suggesting that multiple types of tissue morphogenesis are coordinately regulated by macroscopic changes in body growth.

    DOI: 10.1242/dev.122408

  • Transgenesis of the Wolffian duct visualizes dynamic behavior of cells undergoing tubulogenesis in vivo Reviewed International journal

    Atsuta, Yuji; Tadokoro, Ryosuke; Saito, Daisuke; Takahashi, Yoshiko

    DEVELOPMENT GROWTH & DIFFERENTIATION   55 ( 4 )   579 - 590   2013.5

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    Deciphering how the tubulogenesis is regulated is an essential but unsolved issue in developmental biology. Here, using Wolffian duct (WD) formation in chicken embryos, we have developed a novel method that enables gene manipulation during tubulogenesis in vivo. Exploiting that WD arises from a defined site located anteriorly in the embryo (pronephric region), we targeted this region with the enhanced green fluorescent protein (EGFP) gene by the in ovo electroporation technique. EGFP-positive signals were detected in a wide area of elongating WD, where transgenic cells formed an epithelial component in a mosaic manner. Time-lapse live imaging analyses further revealed dynamic behavior of cells during WD elongation: some cells possessed numerous filopodia, and others exhibited cellular tails that repeated elongation and retraction. The retraction of the tail was precisely regulated by Rho activity via actin dynamics. When electroporated with the C3 gene, encoding Rho inhibitor, WD cells failed to contract their tails, resulting in an aberrantly elongated process. We further combined with the Tol2 transposon-mediated gene transfer technique, and could trace EGFP-positive cells at later stages in the ureteric bud sprouting from WD. This is the first demonstration that exogenous gene(s) can directly be introduced into elongating tubular structures in living amniote embryos. This method has opened a way to investigate how a complex tubulogenesis proceeds in higher vertebrates.

    DOI: 10.1111/dgd.12047

  • The SOCE system is critical for membrane bleb formation to drive avian primordial germ cell migration

    Mizuki Morita, Manami Morimoto, Takayuki Teramoto, Junichi Ikenouchi, Yuji Atsuta, Daisuke Saito

    2023.6

  • Differential modularity of the mammalian Engrailed 1 enhancer network directs sweat gland development Reviewed International journal

    Daniel Aldea, Blerina Kokalari, Yuji Atsuta, Heather L. Dingwall, Ying Zheng, Arben Nace, George Cotsarelis, Yana G. Kamberov

    PLoS Genetics   19 ( 2 )   e1010614   2023.2   ISSN:1553-7404

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    Enhancers are context-specific regulators of expression that drive biological complexity and variation through the redeployment of conserved genes. An example of this is the enhancer-mediated control of Engrailed 1 (EN1), a pleiotropic gene whose expression is required for the formation of mammalian eccrine sweat glands. We previously identified the En1 candidate enhancer (ECE) 18 cis-regulatory element that has been highly and repeatedly derived on the human lineage to potentiate ectodermal EN1 and induce our species' uniquely high eccrine gland density. Intriguingly, ECE18 quantitative activity is negligible outside of primates and ECE18 is not required for En1 regulation and eccrine gland formation in mice, raising the possibility that distinct enhancers have evolved to modulate the same trait. Here we report the identification of the ECE20 enhancer and show it has conserved functionality in mouse and human developing skin ectoderm. Unlike ECE18, knock-out of ECE20 in mice reduces ectodermal En1 and eccrine gland number. Notably, we find ECE20, but not ECE18, is also required for En1 expression in the embryonic mouse brain, demonstrating that ECE20 is a pleiotropic En1 enhancer. Finally, that ECE18 deletion does not potentiate the eccrine phenotype of ECE20 knock-out mice supports the secondary incorporation of ECE18 into the regulation of this trait in primates. Our findings reveal that the mammalian En1 regulatory machinery diversified to incorporate both shared and lineage-restricted enhancers to regulate the same phenotype, and also have implications for understanding the forces that shape the robustness and evolvability of developmental traits.

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  • ニワトリ線維芽細胞と始原生殖細胞におけるプライム編集(Prime editing in chicken fibroblasts and primordial germ cells)

    Atsuta Yuji, Suzuki Katsuya, Iikawa Hiroko, Yaguchi Haruna, Saito Daisuke

    Development, Growth & Differentiation   64 ( 9 )   548 - 557   2022.12   ISSN:0012-1592

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    ニワトリ線維芽細胞および始原生殖細胞(PGC)において、導入遺伝子(EBFP;改変型青色蛍光タンパク質をコードする遺伝子)および内在性遺伝子(cDDX4;DEAD-box型RNAヘリカーゼをコードする遺伝子)に対するプライム編集(PE)について検討した。まず、ニワトリ線維芽細胞を用いてEBFP-EGFP(EGFP;改変型緑色蛍光タンパク質)変換システムを立ち上げた。1塩基の置換でEBFPをEGFPに変換できるため、そのスペクトル変化を利用し、緑色の蛍光を検出することでPEが成功しているかどうかを判断することができた。cDDX4はニワトリPGCの代表マーカーであるため、PGCの編集候補遺伝子として選択した。ニワトリPGCの長期培養系とTol2トランスポゾンを介したゲノム組み込みを活用し、プライム編集PGCのクローンを効率的に得る方法を考案した。本手法により、PGC形成や生殖細胞の発生に関わる分子メカニズムの解明や精密に遺伝子改変されたニワトリの作出への道が開かれるものと考えられた。

  • <i>In ovo</i> electroporation of chicken limb bud ectoderm Electroporation to chick limb ectoderm

    Tomizawa, RR; Tabin, CJ; Atsuta, Y

    DEVELOPMENTAL DYNAMICS   251 ( 9 )   1628 - 1638   2022.9   ISSN:1058-8388 eISSN:1097-0177

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    Background: Deciphering how ectodermal tissues form, and how they maintain their integrity, is crucial for understanding epidermal development and pathogenesis. However, lack of simple and rapid gene manipulation techniques limits genetic studies to elucidate mechanisms underlying these events. Results: Here we describe an easy method for electroporation of chick limb bud ectoderm enabling gene manipulation during ectoderm development and wound healing. Taking advantage of a small parafilm well that constrains DNA plasmids locally and the fact that the limb ectoderm arises from a defined site, we target the limb ectoderm forming region by in ovo electroporation. This approach results in focal and efficient transgenesis of the limb ectodermal cells. Further, using a previously described Msx2 promoter, gene manipulation can be specifically targeted to the apical ectodermal ridge (AER), a signaling center regulating limb development. Using the electroporation technique to deliver a fluorescent marker into the embryonic limb ectoderm, we show its utility in performing time-lapse imaging during wound healing. This analysis revealed previously unrecognized dynamic remodeling of the actin cytoskeleton and lamellipodia formation at the edges of the wound. We find that the lamellipodia formation requires activity of Rac1 GTPase, suggesting its necessity for wound closure. Conclusion: Our method is simple and easy. Thus, it would permit high throughput tests for gene function during limb ectodermal development and wound healing.

    DOI: 10.1002/dvdy.352

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  • Coordination between body growth and tissue growth: Wolffian duct elongation and somitogenesis proceed in harmony with axial growth Invited Reviewed International journal

    Takahashi, Yoshiko; Kudo, Ryo; Tadokoro, Ryosuke; Atsuta, Yuji

    INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY   62 ( 1-3 )   79 - 84   2018.5

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    During embryogenesis, different tissues develop coordinately, and this coordination is often in harmony with body growth. Recent studies allow us to understand how this harmonious regulation is achieved at the levels of inter-cellular, inter-tissue, and tissue-body relationships. Here, we present an overview of recently revealed mechanisms by which axial growth (tail growth) drives a variety of morphogenetic events, with a focus on the coordinated progression between Wolffian (nephric) duct elongation and somitogenesis. We also discuss how we can relate this coordination to the events occurring during limb bud outgrowth, since the limb buds and tail bud are appendage anlagen acquired during vertebrate evolution, both of which undergo massive elongation/outgrowth.

    DOI: 10.1387/ijdb.170290yt

  • Integration of Shh and Fgf signaling in controlling Hox gene expression in cultured limb cells. Reviewed International journal

    Alan R Rodrigues, Nayuta Yakushiji-Kaminatsui, Yuji Atsuta, Guillaume Andrey, Patrick Schorderet, Denis Duboule, Clifford J Tabin

    Proceedings of the National Academy of Sciences of the United States of America   114 ( 12 )   3139 - 3144   2017.3

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    During embryonic development, fields of progenitor cells form complex structures through dynamic interactions with external signaling molecules. How complex signaling inputs are integrated to yield appropriate gene expression responses is poorly understood. In the early limb bud, for instance, Sonic hedgehog (Shh) is expressed in the distal posterior mesenchyme, where it acts as a mediator of anterior to posterior (AP) patterning, whereas fibroblast growth factor 8 (Fgf8) is produced by the apical ectodermal ridge (AER) at the distal tip of the limb bud to direct outgrowth along the proximal to distal (PD) axis. Here we use cultured limb mesenchyme cells to assess the response of the target Hoxd genes to these two factors. We find that they act synergistically and that both factors are required to activate Hoxd13 in limb mesenchymal cells. However, the analysis of the enhancer landscapes flanking the HoxD cluster reveals that the bimodal regulatory switch observed in vivo is only partially achieved under these in vitro conditions, suggesting an additional requirement for other factors.

    DOI: 10.1073/pnas.1620767114

  • Interepithelial signaling with nephric duct is required for the formation of overlying coelomic epithelial cell sheet Reviewed International journal

    Yoshino, Takashi; Saito, Daisuke; Atsuta, Yuji; Uchiyama, Chihiro; Ueda, Shinya; Sekiguchi, Kiyotoshi; Takahashi, Yoshiko

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   111 ( 18 )   6660 - 6665   2014.5

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    In most organs of the body, epithelial tissues are supported by their own basement membrane and underlying stroma, the latter being regarded as a complex of amorphous cells, extracellular matrices, and soluble factors. We demonstrate here that an epithelial tube can serve as a component of stroma that supports the formation of epithelial cell sheet derived from a different origin. During development of the mesonephros in chicken embryos, the intermediate mesoderm (IMM), which contains the Wolffian duct (WD) and its associated tubules, is overlain by a sheet of epithelial cells derived from lateral plate (coelomic) mesoderm. We describe that in normal embryos, epitheliogenesis of IMM tubes and the adjacent coelomic cell sheet proceed in a coordinated manner. When the WD was surgically ablated, the overlying coelomic epithelium exhibited aberrant morphology accompanied by a punctated basement membrane. Furthermore, the WD-ablated coelomic epithelium became susceptible to latent external stress; electroporation of Rac1 resulted in epithelial-to-mesenchymal transitions (EMTs) within the coelomic epithelium. The distorted coelomic epithelium was rescued by implanting fibronectin-producing cells in place of the WD, suggesting that fibronectin provided by WD has an important role acting interepithelially. This notion was corroborated further by directly visualizing a translocation of EGFP-tagged fibronectin from fibronectin-producing to -receiving epithelia in vivo. Our findings provide a novel insight into interepithelial signaling that also might occur in adult tissues to protect against EMT and suggest a possible new target for anticancer therapeutic strategy.

    DOI: 10.1073/pnas.1316728111

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Books

  • Developmental Biology, tenth edition

    監訳, 阿形清和, 高橋淑子(Role:Joint translatorParaxial and intermediate mesoderm)

    メディカル・サイエンス・インターナショナル 

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Presentations

  • Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors Invited

    熱田勇士

    第46回日本分子生物学会年会  2023.12 

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    Event date: 2023.12

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:神戸市   Country:Japan  

  • Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors International conference

    Yuji Atsuta

    第55回日本発生生物学会年会  2022.6 

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    Event date: 2022.5 - 2022.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:金沢市   Country:Japan  

    The limb bud progenitors (LPs), which originate from the somatopleural layer of the lateral plate mesoderm, give rise to the majority of tissues within the mature patterned limb including bones, cartilage and tendons. The lateral plate mesoderm also gives rise to the mesodermal components of the trunk, flank and neck. However, the mesenchymal cells generated at these other axial levels cannot produce the variety of cell types found in the limb, nor can they be directed to form a patterned appendage-like structure, even when placed in the context of the signals responsible for organizing the limb bud. To identify factors involved in establishing limb progenitor properties in lateral plate mesoderm, we took a reprogramming approach, reasoning that the full set of the factors specifying “limbness” might be sufficient to convert non-limb fibroblasts into LP-like cells. As a result, we find that a set of factors (Prdm16, Zbtb16 and Lin28a) is capable of imparting LP-like properties to non-limb fibroblasts. Cells reprogrammed by these factors show similar gene expression profiles, and can differentiate into similar cell types, as endogenous LPs. The further addition of Lin41 potentiates proliferation of the reprogrammed cells while suppressing differentiation. These results suggest that these same four key factors may play pivotal roles in the specification of legitimate LPs.

  • Making vertebrate limbs from non-limb fibroblasts International conference

    Yuji Atsuta

    SDB 79th Meeting  2020.7 

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    Event date: 2020.7

    Language:English   Presentation type:Oral presentation (general)  

    Venue:ONLINE   Country:Japan  

  • Comparative study of the sternal development between chicken and emu

    #権昇俊、Zhaonan Zou、Mizuki Honda、Shinya Oki、熱田勇士

    第56回日本発生生物学会  2023.7 

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    Event date: 2023.7

    Language:English  

    Venue:仙台市   Country:Japan  

  • 再生しようとする試みから四肢発生を理解する Invited

    熱田 勇士

    動物・植物・生態学会三学会合同福岡例会  2022.12 

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    Event date: 2022.12

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:九州大学   Country:Japan  

  • Reprogramming non-limb fibroblasts into limb progenitor-like cells Invited

    Atsuta Y.

    NAIST Bioscience Seminar  2018.11 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:奈良   Country:Japan  

  • In vivo time-lapse imaging of individual cells in an actively extending kidney rudiment International conference

    Atsuta Y., Tadokoro R. and Takahashi Y.

    JSDB 42nd Annual Meeting  2009.5 

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    Event date: 2020.6

    Language:English  

    Venue:新潟   Country:Japan  

  • Tubular formation using Wolffian duct as a model: Tubular extension and cell epithelialization are coordinately regulated

    Atsuta Y., Ohata E., Tadokoro R., Saito D. and Takahashi Y.

    第32回日本分子生物学会年会  2009.12 

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    Event date: 2020.6

    Language:English  

    Venue:横浜   Country:Japan  

  • Tubular formation using Wolffian duct as a model: Tubular extension and cell epithelialization are coordinately regulated. International conference

    Atsuta Y., Ohata E., Tadokoro R., Saito D. and Takahashi Y.

    CDB Symposium “Frontiers in Organogenesis”  2010.3 

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    Event date: 2020.6

    Language:English  

    Venue:神戸   Country:Japan  

  • Epithelialization and extension of tubular structures are regulated by interactions between neighboring tissues International conference

    Atsuta Y., Ohata E., Tadokoro R., Saito D. and Takahashi Y.

    JSDB 43rd Annual Meeting  2010.6 

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    Event date: 2020.6

    Language:English  

    Venue:京都   Country:Japan  

  • Tubular extension and cell epithelialization are coordinately regulated and influenced by adjacent tissues International conference

    Atsuta Y., Ohata E., Tadokoro R., Saito D. and Takahashi Y.

    SDB 69th annual meeting  2010.8 

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    Event date: 2020.6

    Language:English  

    Venue:アルバカーキ   Country:United States  

  • Tubular extension and cell epithelialization are coordinately regulated and influenced by adjacent tissues International conference

    Atsuta Y. and Takahashi Y.

    The 16th International Conference of ISD  2010.10 

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    Event date: 2020.6

    Language:English  

    Venue:奈良   Country:Japan  

  • Tubulogenesis using Wolffian duct as a model: FGF signals regulate tubular elongation and cell epithelialization as environmental factors International conference

    Atsuta Y. and Takahashi Y.

    JSDB 44th Annual Meeting  2011.5 

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    Event date: 2020.6

    Language:English  

    Venue:宜野湾   Country:Japan  

  • Tubule elongation and cell epithelialization are coordinately regulated by FGFs emanating from adjacent tissues International conference

    Atsuta Y., Ueda S. and Takahashi Y.

    JSDB 45th & JSCB 64th Joint Meeting  2012.5 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:神戸   Country:Japan  

  • Coordination between tubular elongation and cell epithelialization is regulated by FGFs emanating from surrounding tissues International conference

    Atsuta Y. and Takahashi Y.

    JSDB 46th Annual Meeting  2013.5 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:松江   Country:Japan  

  • Tubulogenesis using Wolffian duct as a model: Tubule elongation and cell epithelialization are coordinated by FGF signals International conference

    Atsuta Y. and Takahashi Y.

    SDB 73th Annual Meeting  2014.7 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Country:Japan  

  • Designing novel culture systems for long-term expansion of limb bud progenitors International conference

    Atsuta Y., Colle C. and Tabin C.

    Joint Meeting of the German and JSDB  2017.3 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:キール   Country:Germany  

  • Assessing the roles of bioelectric signaling in embryonic patterning using the chicken limb bud as a model International conference

    Atsuta Y. Levin M. and Tabin C.

    SDB 76th Annual Meeting  2017.7 

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    Event date: 2020.6

    Language:English  

    Venue:ミネアポリス   Country:United States  

  • Reprogramming non-limb fibroblasts into limb bud progenitor-like cells International conference

    Atsuta Y., Rodrigues A., Lee C., Colle C. and Tabin C.

    Society for Developmental Biologists (SDB) 77th Annual Meeting  2018.7 

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    Event date: 2020.6

    Language:English  

    Venue:ポートランド(オレゴン)   Country:United States  

  • Reprogramming non-limb fibroblasts into limb bud progenitor-like cells

    Atsuta Y., Lee C., Rodrigues A. and Tabin C.

    第41回日本分子生物学会年会  2018.11 

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    Event date: 2020.6

    Language:English  

    Venue:横浜   Country:Japan  

  • Assessing the roles of bioelectric signaling in embryonic patterning using vertebrate limb buds International conference

    Atsuta Y., Tomizawa R., Levin M. and Tabin C.

    JSDB 52nd Annual Meeting  2019.5 

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    Event date: 2020.6

    Language:English  

    Venue:大阪   Country:Japan  

  • Reprogramming non-limb fibroblasts into limb bud progenitor-like cells International conference

    Atsuta Y. and Tabin C.

    EMBO workshop. Limb Development and Regeneration: New Tools for a Classic Model System  2019.7 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:バルセロナ   Country:Spain  

  • Tubule elongation and cell epithelialization are regulated by FGF signals emanating from adjacent tissues Invited International conference

    Atsuta Y., Ueda S. and Takahashi Y.

    NAIST International Symposium “Top Runners~Women’s Life in Science  2012.1 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:奈良   Country:Japan  

  • Tubulogenesis using Wolffian duct as a model: Tubule elongation and cell epithelialization are coordinated by FGF signals. Invited International conference

    Atsuta Y. and Takahashi Y.

    Japanese Society of Developmental Biologists (JSDB) 47th Annual Meeting  2014.5 

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    Event date: 2020.6

    Language:English   Presentation type:Oral presentation (general)  

    Venue:名古屋   Country:Japan  

  • Attempts to generate vertebrate limbs from non-limb fibroblasts Invited

    Yuji Atsuta

    第57回日本発生生物学会  2024.6 

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  • 四肢前駆細胞を産み出すリプログラミング法の開発を通して四肢発生を理解する Invited

    熱田勇士

    第46回日本分子生物学会年会  2023.12 

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    Presentation type:Oral presentation (invited, special)  

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  • 再現しようとする試みから四肢発生を理解する Invited

    熱田勇士

    動物・植物・生態学会三学会合同福岡例会  2022.12 

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    Language:Japanese   Presentation type:Oral presentation (invited, special)  

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  • Identification of factors that reprogram mouse and human fibroblasts to limb bud progenitor-like cells Invited

    Yuji Atsuta

    EMBO workshop; Limb development: Fundamental mechanisms, evolution, disease and regeneration  2024.6 

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  • SOCEシステムはニワトリ始原生殖細胞の移動を駆動する膜ブレブ形成に必須である。

    森田 瑞基, 森本 愛深, 寺本 孝行, 池ノ内 順一, 熱田 勇士, 齋藤 大介

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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    Language:English  

  • Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors

    Yuji Atsuta, Changhee Lee, Cliff Tabin

    JSDB 55th Annual Meeting(金沢)  2022.6 

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MISC

  • 翻訳: 「ギルバート発生生物学」第12章「沿軸中胚葉と中間中胚葉」 Reviewed

    熱田 勇士

    メディカル・サイエンス・インターナショナル   2015.3

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    Language:Japanese  

Professional Memberships

  • Japanese Society of Developmental Biologists

  • Society for Developmental Biology

  • Society for Developmental Biology

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  • Japanese Society of Developmental Biologists

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Academic Activities

  • Screening of academic papers

    Role(s): Peer review

    2023

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    Type:Peer review 

    Number of peer-reviewed articles in foreign language journals:2

  • Screening of academic papers

    Role(s): Peer review

    2022

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    Type:Peer review 

    Number of peer-reviewed articles in foreign language journals:2

  • Frontiers in Cell and Developmental Biology International contribution

    2021.11 - 2023.10

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    Type:Academic society, research group, etc. 

  • Screening of academic papers

    Role(s): Peer review

    2021

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    Type:Peer review 

    Number of peer-reviewed articles in foreign language journals:2

Research Projects

  • 内藤記念次世代育成支援研究助成金/非四肢細胞を用いて肢芽組織を再現する試み

    2024

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    Grant type:Donation

  • 蛇足創出ロードマップ

    2022 - 2024

    JST Strategic Basic Research Program (Ministry of Education, Culture, Sports, Science and Technology)

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    Authorship:Principal investigator  Grant type:Contract research

  • 発生現象を模倣し四肢復元再生技術の基盤を構築する

    Grant number:21K06201  2021

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    熱田 勇士

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    Authorship:Principal investigator  Grant type:Scientific research funding

    本研究では、以下の3項目について研究を行う。
    (1)ヒトiLPCを用いた肢芽様オルガノイド “リムボイド”の構築;リプログラミング技術とマイクロ流路システムを組み合わせることによって、ヒト線維芽細胞からヒト四肢様オルガノイド(リムボイド)作製を試みる。
    (2)内在性AER細胞の培養条件の最適化とリプログラミングによるiAERの作製;ニワトリ線維芽細胞からAER様細胞を生み出すiAERリプログラミング法確立を目指す。
    (3)ニワトリiLPCとiAERを用いた異所肢の作製;誘導されたiLPCとiAERが生体内で四肢発生を再現できるかについて調べるため、両細胞を用いて異所肢の作製を試みる

    CiNii Research

  • 住友財団基礎科学研究助成/竜骨突起形成メカニズムの解明

    2021

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    Grant type:Donation

  • オルガノイドファインチューニング技術によるヒト四肢組織再構成

    2021

    理研ー九大ハブ研究

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    Authorship:Principal investigator  Grant type:On-campus funds, funds, etc.

  • ダイレクトリプログラミングと3次元培養系を駆使した四肢様オルガノドの創出

    Grant number:20K22658  2020 - 2021

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Research Activity start-up

    熱田 勇士

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    Authorship:Principal investigator  Grant type:Scientific research funding

    四肢再生は積年の治療課題である。米国では約200万人が外傷性や先天性の四肢欠損を患っていることから、本邦においても多くの症例数が推定される。しかしながら、昨今の再生生物学の目覚ましい発展を以ってしても、切断肢を完全な四肢構造で交換、再生するという究極的な細胞療法の実現には程遠い。本研究では、四肢再生の基盤構築を念頭におき、ダイレクトリプログラミング法および3次元培養系を駆使して、線維芽細胞から四肢様オルガノイド(リムボイド)を創出する方法論を確立する。

    CiNii Research

  • 加藤記念研究助成メディカルサイエンス分野/線維芽細胞から四肢前駆細胞を産み出すリプログラミング法の確立と四肢構造の再現

    2020

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    Grant type:Donation

  • 線維芽細胞から手足をつくる: 四肢前駆細胞を生み出す細胞リプログラミング法の確立

    2017 - 2018

    Japan Society for the Promotion of Science  Postdoctoral Fellowships for Research Abroad

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    Authorship:Principal investigator  Grant type:Joint research

  • 生体内における上皮管構造の形成と伸長の制御機構

    2010 - 2012

    Japan Society for the Promotion of Science  Research Fellowships for Young Scientists

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    Authorship:Principal investigator  Grant type:Joint research

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Class subject

  • 分子発生学

    2024.10 - 2025.3   Second semester

  • 生物科学Ⅰ

    2024.4 - 2024.6   Spring quarter

  • Basic BiologyⅠ

    2024.4 - 2024.6   Spring quarter

  • 基礎科学実習

    2023.12 - 2024.2   Winter quarter

  • 発生生物学

    2023.10 - 2024.3   Second semester

  • 分子発生学

    2023.10 - 2024.3   Second semester

  • 自然科学総合実験

    2023.10 - 2023.12   Fall quarter

  • 生命の科学A

    2023.6 - 2023.8   Summer quarter

  • 応用分子生物学実験

    2023.4 - 2023.9   First semester

  • 基礎科学実習

    2022.12 - 2023.2   Winter quarter

  • 生物学演習I

    2022.10 - 2023.3   Second semester

  • 発生生物学(1月28日分)

    2022.10 - 2023.3   Second semester

  • 自然科学総合実験

    2022.10 - 2022.12   Fall quarter

  • 応用分子生物学実験

    2022.4 - 2022.9   First semester

  • 細胞生物学(第14回分)

    2022.4 - 2022.9   First semester

  • 生物学演習I

    2021.10 - 2022.3   Second semester

  • 自然科学総合実験

    2021.10 - 2021.12   Fall quarter

  • 応用分子生物学実験

    2021.4 - 2021.9   First semester

  • 基礎科学実習

    2021.4 - 2021.9   First semester

  • 分子発生学(第6回講義分)

    2021.4 - 2021.9   First semester

  • 自然科学総合実験

    2020.12 - 2021.2   Winter quarter

  • 応用分子生物学実験

    2020.10 - 2021.3   Second semester

  • 自然科学総合実験

    2020.10 - 2020.12   Fall quarter

  • 分子発生学(第11回分)

    2020.4 - 2020.9   First semester

  • 細胞生物学(第13回分)

    2020.4 - 2020.9   First semester

  • 基礎科学実習

    2024.12 - 2025.2   Winter quarter

  • 分子発生学

    2024.10 - 2025.3   Second semester

  • 自然科学総合実験

    2024.10 - 2024.12   Fall quarter

  • 学際開拓創成セミナーⅠ

    2024.4 - 2025.3   Full year

  • 修士論文

    2024.4 - 2025.3   Full year

  • 中間考査

    2024.4 - 2025.3   Full year

  • システム生命科学特別研究

    2024.4 - 2025.3   Full year

  • システム生命科学特別演習Ⅱ

    2024.4 - 2025.3   Full year

  • システム生命科学特別演習Ⅰ

    2024.4 - 2025.3   Full year

  • 生物科学Ⅰ

    2024.4 - 2024.6   Spring quarter

  • Basic BiologyⅠ

    2024.4 - 2024.6   Spring quarter

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Social Activities

  • 再現しようとする試みから四肢発生原理を理解する

    Role(s):Lecturer

    九州大学理学部生物学科  第22回 九州大学理学部生物学科 市民公開講座  2023.8

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    Type:Citizen’s meeting/Assembly

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  • 企業とアカデミア、両方の勤務経験から語る仕事論

    Role(s):Lecturer

    第6回 九州大学理学部生物科学科特別セミナー  2022.10

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    Type:Seminar, workshop

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Media Coverage

  • ヘビに足を生えさせる? 奇抜な研究の深〜い意味 Newspaper, magazine

    読売新聞社  読売新聞オンライン Webコラム  2023.3

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    Author:Other 

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  • Webコラムに研究内容紹介記事が掲載された(2023年3月8日)。 タイトル「ヘビに足を生えさせる? 奇抜な研究の深~い意味」 Newspaper, magazine

    読売新聞オンライン  2023.3

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    Webコラムに研究内容紹介記事が掲載された(2023年3月8日)。
    タイトル「ヘビに足を生えさせる? 奇抜な研究の深~い意味」