KUBO TAKAHIKO
Organization
Faculty of Agriculture Department of Bioscience and Biotechnology Professor
Plant Frontier Research Center
（Joint Appointment）
Faculty of Agriculture Institute of Genetic Resources（Joint Appointment）
School of Agriculture Department of Bioresource and Bioenvironment（Joint Appointment）
Graduate School of Bioresource and Bioenvironmental Sciences Department of Bioscience and Biotechnology（Joint Appointment）
Title
Professor
Contact information
Profile
<Research Activity>
Our research focuses on reproductive mechanism and molecular evolution in rice. We are also responsible for conservation and distribution of rice genetic resources of local varieties and mutant lines.
External link
Degree
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Dr. of Agriculture
Research History
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The Graduate University for Advanced Studies, Assistant Professor
Research Interests・Research Keywords
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Research theme：Study on geneic mechanism of rice storage starch
Keyword：Starch, Oryza saitiva, endosperm
Research period： 2018.4
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Research theme：Functional and evolutionary analysis of rice genes involved in reproductive development
Keyword：Rice, Gametogenesis, Gene function, Genetic diversity
Research period： 2016.7
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Research theme：Construction of rice mutation pool in National Bioresources Projest (NBRP)
Keyword：Rice, Mutation, Gene Function, N-methyl-N-nitrosourea, TILLING
Research period： 2016.7
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Research theme：Research on preservation and property evaluation in rice germplasm
Keyword：Genetic resource, Trait evaluation, Natural variation, Database
Research period： 2016.7
Awards
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日本育種学会奨励賞
2013.3 日本育種学会
Papers
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MiRiQ database: a platform for in silico rice mutant screening Reviewed International journal
Kubo T. , Yamagata Y., Matsusaka M., Toyoda A., Sato Y., and Kumamaru T.
Plant Cell Physiology 2023.11
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Whole-Genome Sequencing of Rice Mutant Library Members Induced by N-Methyl-N-Nitrosourea Mutagenesis of Fertilized Egg Cells Reviewed International journal
Kubo T., Yamagata Y., Matsusaka H., Toyoda A., Sato Y. and Kumamaru T.
Rice 15 ( 1 ) 38 2022.7
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Loss of OsEAF6, a Subunit of the Histone Acetyltransferase Complex, Causes Hybrid Breakdown in Intersubspecific Rice Crosses Invited Reviewed International journal
Kubo T, Yoshimura A, and Kurata N
Frontiers in Plant Science 13 866404 2022.4
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Collection, preservation and distribution of Oryza genetic resources by the National Bioresource Project RICE (NBRP-RICE). Reviewed International journal
Sato Y, Tsuda K, Yamagata Y, Matsusaka H, Kajiya-Kanegae H, Yoshida Y, Agata A, Ta KN, Shimizu-Sato S, Suzuki T, Nosaka-Takahashi M, Kubo T, Kawamoto S, Nonomura K, Yasui H, Kumamaru T
Breeding Science 71 291 - 298 2021.9
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Light‑induced chloroplast movements in Oryza species. Reviewed International journal
2020.4
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Evolution and diversity of the wild rice Oryza officinalis complex, across continents, genome types,and ploidy levels. Reviewed International journal
Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, Kudrna D, Wing R, Yano K, Nonomura KI, Sato Y, Kurata N.
12 ( 4 ) 413 - 428 2020.3
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Genetic characterization and fine mapping of S25, a hybrid male sterility gene, on rice chromosome 12. Reviewed International journal
Kubo T., Yoshimura A., Kurata N.
Genes & Genetic Systems 92 205 - 212 2017.12
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Two tightly linked genes at the hsa1 locus cause both F1 and F2 hybrid sterility in rice. Reviewed International journal
Kubo Takahiko, Takashi T., Ashikari M., Atsushi Yoshimura, Kurata N.
Molecular Plant 9 221 - 232 2016.10
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Pollen killer gene S35 function requires interaction with an activator that maps close to S24, another pollen killer gene in rice. Reviewed International journal
Kubo T., Yoshimura, A., Kurata N.
G3 (Bethesda) 6 1459 - 1468 2016.5
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OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development. Reviewed International journal
Kurusu T., Koyano T., Hanamata S., Kubo Takahiko, Noguchi Y., Yagi C., Nagata N., Yamamoto T., Ohnishi T., Kurata N., Kuchitsu K.
Autophagy 10 878 - 888 2014.5
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Transcriptome analysis of developing ovules in rice isolated by laser microdissection. Reviewed International journal
Kubo T., Fujita M., Takahashi H, Nakazono M., Tsutsumi N., Kurata N.
Plant Cell Physiology 54 750 - 765 2013.11
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A map of rice genome variation reveals the origin of cultivated rice. Reviewed International journal
Huang X., Kurata N., Wei X., Wang Z.X., Wang A., Zhao Q., Zhao Y., Liu K., Lu H., Li W., et al.
Nature 490 497 - 501 2012.10
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Genome-wide association analysis provides insights into the genetic basis of photosynthetic responses to low-temperature stress in spring barley. Reviewed International journal
Elakhdar A, Slaski JJ, Kubo T, Hamwieh A, Hernandez Ramirez G, Beattie AD, Capo-Chichi LJA.
Frontiers in Plant Science 14 1159016 2023.6
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Genetic diversity and population structure assessment of Western Canadian barley cooperative trials Reviewed International journal
Capo-chichi, L. J. A., Elakhdar, A., Kubo, T., Nyachiro, J., Juskiw, P., Capettini, F., Slaski, J. J., Ramirez, G. H. & Beattie, A. D.,
Frontiers in Plant Science. 13 1006719 2023.1
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Barley with improved drought tolerance: Challenges and perspectives Reviewed International journal
Ammar Elakhdar, Shyam Solanki, Takahiko Kubo, Amina Abed, Ibrahim Elakhdar, Rania Khedr, Aladdin Hamwieh, Ludovic J.A. Capo-chichi, Mohamed Abdelsattar, Jerome D. Franckowiak, Calvin O. Qualset
Environmental and Experimental Botany 201 1049965 2022.7
Books
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遺伝子図鑑 「植物の発生を制御する遺伝子」
久保 貴彦（ Role： Joint author）
悠書館 2013.10
Presentations
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Characterization of a new gene involved in starch metabolism of rice
Tho N.T.P., Nakamura T., Kumamaru T., and Kubo T.
2019.9
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Fine-mapping of INK gene responsible for hybrid male sterility in rice
Rahma S.N.A.F, Kumamaru T., and Kubo T.
2019.9
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Dissecting genetic networks underlying F1 hybrid sterility and hybrid breakdown in rice. International conference
Kubo Takahiko, Atsushi Yoshimura, Nori Kurata
Plant Genome Evolution 2017.10
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イネ花粉キラーの遺伝的機構
久保 貴彦, 吉村 淳, 倉田のり
日本育種学会 第１１回九州育種談話会 2016.12
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イネPollen killer S35の活性化に関わる新規遺伝子座の解析
久保 貴彦, 吉村 淳, 倉田 のり
日本育種学会 2016.9
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Genetic network of hybrid sterility in an indica-japonica cross. Invited International conference
Kubo T.
Workshop on the Nature of Reproductive Barriers in Rice 2016.9
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野生イネOryza属200ゲノムの解読と多様性・系統関係の解析
倉田のり, ＜省略＞, 久保 貴彦, 他
日本育種学会 第128回講演会 2015.9
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Epistatic networks underlying rice pollen killer system. International conference
Kubo T., Yoshimura A., Kurata N.
13th International Symposium on Rice Functional Genomics 2015.5
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Phenotypic diversity and genetic dissection of adaptive traits of wild rice (Oryza rufipogon). International conference
Onogi A., Wang Z.X., Kanegae H., Iwata H., Kubo T., et al.
13th International Symposium on Rice Functional Genomics 2015.5
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Phylogenetic analysis in the Oryza officinalis complex. International conference
13th International Symposium on Rice Functional Genomics 2015.5
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Characterization of the Esp4 mutant highly accumulating the cysteine-rich prolamines in rice seed
Elakhdar A, Kubo T, and Kumamaru T
2024.7
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イネ種子貯蔵タンパク質グルテリンの細胞内輸送に関わるglup7変異体の解析
福田真子、Elakhdar A、久保貴彦、熊丸敏博
イネ遺伝学・分子生物学ワークショップ 2024.7
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Characterization of new sugary gene involved in rice starch metabolism
2023.12
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Characterization of the endosperm storage protein 3 mutant indicating the low level of the cysteine-rich prolamines in rice endosperm
Ammar Elakhdar, Tran Hong, Quan,Tomokazu Ushijima, Takahiko Kubo, and Toshihiro Kumamaru
2023.12
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イネグルテリン前駆体の細胞内輸送に関わるGlup1変異体の解析
吉田修也, Ammar Elakhdar, 福田真子 , 久保貴彦, 熊丸敏博
日本育種学会第１８回九州育種談話会 2023.12
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イネ種子貯蔵物質のオーキシンによる制御メカニズム
小倉岳彦、久保貴彦
日本育種学会第１８回九州育種談話会 2023.12
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in silico rice mutant screening system
Kubo T, Yamagata Y, Matsusaka, Sato Y, Kumamaru T.
2023.7
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イネ種子貯蔵物質のオーキシンによる制御メカニズム
小倉岳彦、久保貴彦
イネ遺伝学・分子生物学ワークショップ 2023.7
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Molecular characterization of the esp3 mutant indicating the low level of the cysteine rich prolamines in rice endosperm. International coauthorship
Elakhdar A, Quan T, Ushijima T, Kubo T, and Kumamaru T.
2023.7
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イネ変異体オンラインスクリーニングシステムの構築と公開
久保 貴彦、山形 悦透、松坂 弘明、佐藤 豊、熊丸 敏博
日本育種学会 2023.3
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Identification of a gene causing floury endosperm in rice
2022.3
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イネMNU 変異体ライブラリーのゲノム解読と利用に向けたデータベース整備
久保 貴彦, 山形 悦透, 松坂 弘明, 佐藤 豊,熊丸 敏博
日本育種学会 2022.3
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イネの亜種分化に関わる因子の解明 Invited
久保貴彦
2020.12
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Oryza sativa L.とO. glaberrima Steud.間種間交雑に由来するF1花粉不稔遺伝子座S18の近同質遺伝子系統におけるタペート崩壊の異常
藤原渉、井上惇之、久保貴彦、安井秀、吉村淳、山形悦透
日本育種学会 第14回九州育種談話会 2019.11
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Identification of genomic region harboring Endosperm Storage Protein (ESP) 3 gene regulating the Cysteine-rich prolamine by MutMap.
Tran Hong Quan, Ammar Elakhdar, Hiroaki Matsusaka, Tomokazu Ushijima,Takahiko Kubo, Toshirhiro Kumamaru
2019.11
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超軟質米の作出に向けた Isoamylase１活性低下変異の単離および解析
中村哲洋、Tho Nguyen、久保貴彦、熊丸敏博
日本育種学会 第14回九州育種談話会 2019.11
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Characterization of a new sugary gene in rice
Nguyen Thi Phuong Tho, Tetsuhiro Nakamura, Toshirhiro Kumamaru, Takahiko Kubo
JSB branch meeting 2018.12
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イネ変異体コレクションの評価 -現状と今後-
久保貴彦、山形悦透、安井秀、佐藤豊、熊丸敏博
日本育種学会 第13回九州育種談話会 2018.12
MISC
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Genetic mechanisms of postzygotic RI: an epistatic network in rice.
Kubo T.
Breeding Science 2013.12
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久保 貴彦
2013.9
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生物の科学 遺伝 「栽培イネの起源に迫る」
久保 貴彦, 倉田 のり
（株）エヌ・ティー・エス 2013.7
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イネの栽培化の起源がゲノムの全域における変異比較解析により判明した
倉田 のり, 久保 貴彦
ライフサイエンス新着論文レビュー 2012.12
Industrial property rights
| Patent | Number of applications: 2 | Number of registrations: 2 |
| Utility model | Number of applications: 0 | Number of registrations: 0 |
| Design | Number of applications: 0 | Number of registrations: 0 |
| Trademark | Number of applications: 0 | Number of registrations: 0 |
Professional Memberships
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Japanese Society of Breeding
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The Genetics Society of Japan
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The molecular Biology Society of Japan
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International Association of Sexual Plant Reproduction Research
Committee Memberships
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Steering committee member Domestic
2018.4 - 2022.3
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日本育種学会 地域幹事 Domestic
2018.4 - 2022.3
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Steering committee member Domestic
2017.4 - 2022.3
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Steering committee member Domestic
2017.4 - 2022.3
Academic Activities
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Screening of academic papers
Role(s)： Peer review
2023
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Frontiers in Plant Science International contribution
2022.7 - Present
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座長
第141回日本育種学会講演会 （ オンライン ） 2022.3
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Screening of academic papers
Role(s)： Peer review
2022
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運営委員長
日本育種学会第１6回九州育種談話会 （ オンライン開催 ） 2021.11
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Screening of academic papers
Role(s)： Peer review
2021
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座長
日本育種学会第１5回九州育種談話会 （ オンライン開催 ） 2020.12 - 2021.12
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Screening of academic papers
Role(s)： Peer review
2020
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運営委員
日本育種学会第１4回九州育種談話会 （ 東海大学（熊本県） ） 2019.11
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Screening of academic papers
Role(s)： Peer review
2019
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運営委員
日本育種学会第１３回九州育種談話会 （ 南九州大学 ） 2018.12
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運営委員
日本育種学会第１３３回講演会 （ 福岡市 ） 2018.3
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Screening of academic papers
Role(s)： Peer review
2018
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Screening of academic papers
Role(s)： Peer review
2017
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座長（Chairmanship）
日本育種学会 （ 鳥取大学 ） 2016.9
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座長（Chairmanship）
日本育種学会 （ 東北大学 ） 2014.3
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座長（Chairmanship）
日本育種学会 （ 宇都宮大学 ） 2012.3
Research Projects
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イネ花粉機能に関わる超遺伝子の構造と進化過程の解明
Grant number：20K05985 2020 - 2023
日本学術振興会 科学研究費助成事業 基盤研究(C)
Authorship：Principal investigator Grant type：Scientific research funding
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イネ種子の細胞内物質貯蔵における小胞体機能タンパク質の機能解明とその育種的利用
Grant number：19H02933 2019 - 2024
日本学術振興会 科学研究費助成事業 基盤研究(B)
Authorship：Coinvestigator(s) Grant type：Scientific research funding
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殺花粉作用を誘発する胞子体因子の解明
Grant number：17K07603 2017 - 2019
日本学術振興会 科学研究費助成事業 基盤研究(C)
Authorship：Principal investigator Grant type：Scientific research funding
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GWAS を用いた野生イネの生育、代謝形質と遺伝変異の相関解析
Grant number：25252005 2013 - 2016
日本学術振興会 科学研究費助成事業 基盤研究(A)
Authorship：Coinvestigator(s) Grant type：Scientific research funding
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花粉キラーを制御する分子ネットワークの解明
Grant number：25450012 2013 - 2016
日本学術振興会 科学研究費助成事業 基盤研究(C)
Authorship：Principal investigator Grant type：Scientific research funding
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ナショナルバイオリソースプロジェクト 「イネ属の多様性を生かすリソース基盤の構築」（多様な高品質イネ実験系統の整備）
2012.4 - 2022.3
国立遺伝学研究所
Authorship：Coinvestigator(s)
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イネの胚のう形成後期に機能する遺伝子群の同定
Grant number：21780008 2009 - 2011
科学研究費助成事業 若手研究(B)
Authorship：Principal investigator Grant type：Scientific research funding
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イネ生殖過程におけるゲノム障壁遺伝子の単離と機能解析
Grant number：18075009 2008 - 2010
科学研究費助成事業 特定領域研究
Authorship：Coinvestigator(s) Grant type：Scientific research funding
Educational Activities
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Department of Bioscience and Biotechnology, Faculty of Agriculture
Plant Genetic Engineering
Class subject
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植物育種学各論Ⅱ
2023.12 - 2024.2 Winter quarter
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植物遺伝子工学特論
2023.10 - 2023.12 Fall quarter
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バイオリソース特論
2023.4 - 2023.6 Spring quarter
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植物育種学各論Ⅱ
2022.12 - 2023.2 Winter quarter
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植物遺伝子工学特論
2022.10 - 2022.12 Fall quarter
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Master's Thesis Research Ⅱ
2022.4 - 2023.3 Full year
-
Master's Thesis
2022.4 - 2023.3 Full year
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Seminar in a Specified Field Ⅱ
2022.4 - 2023.3 Full year
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集団生物学
2022.4 - 2022.9 First semester
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バイオリソース特論
2022.4 - 2022.6 Spring quarter
-
植物育種学各論
2021.10 - 2022.3 Second semester
-
植物遺伝子工学特論
2021.10 - 2021.12 Fall quarter
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Master's Thesis Research Ⅰ
2021.4 - 2022.3 Full year
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Master's Thesis Research II
2021.4 - 2022.3 Full year
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集団生物学
2021.4 - 2021.9 First semester
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Plant Production and Physiology
2021.4 - 2021.9 First semester
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Seminar in a Specified Field Ⅰ
2021.4 - 2021.6 Spring quarter
-
バイオリソース特論(国際コース)
2021.4 - 2021.6 Spring quarter
-
バイオリソース特論
2021.4 - 2021.6 Spring quarter
-
システム生物工学プロジェクト演習
2020.12 - 2021.2 Winter quarter
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植物育種学各論
2020.10 - 2021.3 Second semester
-
植物遺伝子工学特論
2020.10 - 2020.12 Fall quarter
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集団生物学
2020.4 - 2020.9 First semester
-
Seminar in a Specified Field II
2020.4 - 2020.9 First semester
-
バイオリソース特論(国際コース)
2020.4 - 2020.6 Spring quarter
-
バイオリソース特論
2020.4 - 2020.6 Spring quarter
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植物遺伝子工学
2019.10 - 2019.12 Fall quarter
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修士論文
2019.4 - 2020.3 Full year
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集団生物学
2019.4 - 2019.9 First semester
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Plant Production and Physiology
2019.4 - 2019.9 First semester
-
バイオリソース特論
2019.4 - 2019.6 Spring quarter
-
Seminar in a Specified Field Ⅲ
2019.4 - 2019.6 Spring quarter
-
Master's Thesis Research Ⅱ
2019.4 - 2019.6 Spring quarter
-
植物遺伝子工学特論
2018.10 - 2018.12 Fall quarter
-
システム生物学特別研究第二
2018.4 - 2019.3 Full year
-
集団生物学
2018.4 - 2018.9 First semester
-
バイオリソース特論
2018.4 - 2018.6 Spring quarter
-
Seminar in a Specified FieldⅡ
2018.4 - 2018.6 Spring quarter
-
Master’s Thesis ResearchⅠ
2018.4 - 2018.6 Spring quarter
-
System Biology
2018.4 - 2018.6 Spring quarter
-
植物遺伝子工学特論
2017.10 - 2018.3 Second semester
-
Seminar in a Specified Field I
2017.10 - 2017.12 Fall quarter
-
システム生物学特別研究第一
2017.4 - 2018.3 Full year
-
システム生物学プロジェクト演習
2017.4 - 2018.3 Full year
-
集団生物学
2017.4 - 2017.9 First semester
-
バイオリソース特論
2017.4 - 2017.9 First semester
-
自然科学総合実験
2017.4 - 2017.9 First semester
-
System Biology
2017.4 - 2017.6 Spring quarter
-
植物遺伝子工学特論
2016.10 - 2017.3 Second semester
FD Participation
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2023.11 Role：Speech Title：遺伝子組換え実験の安全管理について
Organizer：[Undergraduate school/graduate school/graduate faculty]
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2022.3 Role：Participation Title：農学研究院FD：国費特別プログラム「未来の農を描くビジョンデザイン実践プログラム」実施に向けて
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2022.3 Role：Participation Title：国費特別プログラム「未来の農を描くビジョンデザイン実践プログラム」実施に向けて
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2022.3 Role：Participation Title：リポジトリ登録を対象とした 大学改革推進経費の新指標案について
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2021.12 Role：Participation Title：電子教材著作権講習会
Organizer：University-wide
-
2021.12 Role：Participation Title：電子教材著作権講習会
Organizer：University-wide
-
2021.12 Role：Participation Title：電子教材開発者向け講習会
Organizer：University-wide
-
2021.7 Role：Participation Title：農学研究院FD「科研費を獲りにいこう！ 科研費獲得の技術と工夫」
Organizer：[Undergraduate school/graduate school/graduate faculty]
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2021.2 Role：Participation Title：アカデミック・ライティング＆プレゼンテーション教材開発 ―英語で科学するアクティブ・ラーナー育成に向けて―
Organizer：University-wide
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2020.12 Role：Participation Title：大学の研究評価の現状と農学研究院の「部局独自の評価基準」案における業績分析
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2020.12 Role：Participation Title：UQ-KU Education Forum 2020 (Day 2) −Teaching effectively in the time of COVID-19−
Organizer：University-wide
-
2020.9 Role：Participation Title：科研費を獲りにいこう！ 勝ち抜く気合と技術
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2019.11 Role：Participation Title：留学生との共生に向けて
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2019.9 Role：Participation Title：コンプライアンス研修
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2019.5 Role：Participation Title：優良な博士人材の獲得と育成に向けて ～農学研究院教授に学ぶ ～
Organizer：[Undergraduate school/graduate school/graduate faculty]
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2017.11 Role：Participation Title：産学官共同研究における費用負担と営業秘密の管理について
Organizer：[Undergraduate school/graduate school/graduate faculty]
-
2017.4 Role：Participation Title：第１回全学FD(新任教員の研修）
Organizer：University-wide
-
2016.9 Role：Participation Title：M2B学習支援システム講習会（実践演習）
Organizer：University-wide
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2016.7 Role：Participation Title：第１回農学研究院FD「本学における障害者支援について」
Organizer：[Undergraduate school/graduate school/graduate faculty]
Other educational activity and Special note
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2024 Coaching of Students' Association
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2024 Coaching of Students' Association
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2023 Coaching of Students' Association
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2023 Coaching of Students' Association
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2022 Coaching of Students' Association
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2022 Coaching of Students' Association
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2021 Coaching of Students' Association
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2021 Coaching of Students' Association
Activities contributing to policy formation, academic promotion, etc.
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2016.7 - 2021.3 イネ小委員会
イネ小委員会およびNBRPイネ運営委員会への参加
Educational Activities for Highly-Specialized Professionals in Other Countries
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2018.4 JICA training program
Main countries of student/trainee affiliation：Myanmar
Other countries of student/trainee affiliation：Vietnam
Travel Abroad
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2020.2
Staying countory name 1：Myanmar Staying institution name 1：Department of Agricultural Research, Ministry of Agriculture
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2019.3
Staying countory name 1：Myanmar Staying institution name 1：Department of Agricultural Research, Ministry of Agriculture
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2017.10
Staying countory name 1：Spain Staying institution name 1：Melia Sitges
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2016.9 - 2016.10
Staying countory name 1：China Staying institution name 1：雲南省農業科学院