Updated on 2025/04/10

Information

 

写真a

 
MIURA SHIZUKA
 
Organization
Medical Institute of Bioregulation Department of Molecular and Cellular Biology Associate Professor
Title
Associate Professor
Contact information
メールアドレス
Tel
0926426449
External link

Degree

  • Doctor(medicine)

Research Interests・Research Keywords

  • Research theme: generation of induced fetal intestine derived progenitor cells for medical aplication

    Keyword: regenerative therapy, direct reprogramming, intestinal progenitor cells

    Research period: 2021.10 - 2024.10

Awards

  • 九州大学若手女性研究者・女子大学院生優秀研究者賞 最優秀賞

    2019.10   九州大学  

  • 井上研究奨励賞

    2019.2   井上科学振興財団  

Papers

  • Hepatocytes differentiate into intestinal epithelial cells through a hybrid epithelial/mesenchymal cell state in culture. Reviewed International journal

    Shizuka Miura, Kenichi Horisawa, Tokuko Iwamori, Satoshi Tsujino, Kazuya Inoue, Satsuki Karasawa, Junpei Yamamoto, Yasuyuki Ohkawa, Sayaka Sekiya, Atsushi Suzuki

    Nature communications   15 ( 1 )   3940 - 3940   2024.5   eISSN:2041-1723

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Nature Communications  

    Hepatocytes play important roles in the liver, but in culture, they immediately lose function and dedifferentiate into progenitor-like cells. Although this unique feature is well-known, the dynamics and mechanisms of hepatocyte dedifferentiation and the differentiation potential of dedifferentiated hepatocytes (dediHeps) require further investigation. Here, we employ a culture system specifically established for hepatic progenitor cells to study hepatocyte dedifferentiation. We found that hepatocytes dedifferentiate with a hybrid epithelial/mesenchymal phenotype, which is required for the induction and maintenance of dediHeps, and exhibit Vimentin-dependent propagation, upon inhibition of the Hippo signaling pathway. The dediHeps re-differentiate into mature hepatocytes by forming aggregates, enabling reconstitution of hepatic tissues in vivo. Moreover, dediHeps have an unexpected differentiation potential into intestinal epithelial cells that can form organoids in three-dimensional culture and reconstitute colonic epithelia after transplantation. This remarkable plasticity will be useful in the study and treatment of intestinal metaplasia and related diseases in the liver.

    DOI: 10.1038/s41467-024-47869-2

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  • Transcription factor-mediated direct cellular reprogramming yields cell-type specific DNA methylation signature Reviewed

    Kenichi Horisawa, Shizuka Miura, Hiromitsu Araki, Fumihito Miura, Takashi Ito, Atsushi Suzuki

    Scientific Reports   13 ( 1 )   22317   2023.12

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    Abstract

    Direct reprogramming, inducing the conversion of one type of somatic cell into another by the forced expression of defined transcription factors, is a technology with anticipated medical applications. However, due to the many unresolved aspects of the induction mechanisms, it is essential to thoroughly analyze the epigenomic state of the generated cells. Here, we performed comparative genome-wide DNA methylation analyses of mouse embryonic fibroblasts (MEFs) and cells composing organoids formed by intestinal stem cells (ISCs) or induced ISCs (iISCs) that were directly induced from MEFs. We found that the CpG methylation state was similar between cells forming ISC organoids and iISC organoids, while they differed widely from those in MEFs. Moreover, genomic regions that were differentially methylated between ISC organoid- and iISC organoid-forming cells did not significantly affect gene expression. These results demonstrate the accuracy and safety of iISC induction, leading to the medical applications of this technology.

    DOI: 10.1038/s41598-023-49546-8

  • Secretory GFP reconstitution labeling of neighboring cells interrogates cell–cell interactions in metastatic niches Reviewed

    Misa Minegishi, Takahiro Kuchimaru, Kaori Nishikawa, Takayuki Isagawa, Satoshi Iwano, Kei Iida, Hiromasa Hara, Shizuka Miura, Marika Sato, Shigeaki Watanabe, Akifumi Shiomi, Yo Mabuchi, Hiroshi Hamana, Hiroyuki Kishi, Tatsuyuki Sato, Daigo Sawaki, Shigeru Sato, Yutaka Hanazono, Atsushi Suzuki, Takahide Kohro, Tetsuya Kadonosono, Tomomi Shimogori, Atsushi Miyawaki, Norihiko Takeda, Hirofumi Shintaku, Shinae Kizaka-Kondoh, Satoshi Nishimura

    Nature Communications   14 ( 1 )   2023.12

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    Abstract

    Cancer cells inevitably interact with neighboring host tissue-resident cells during the process of metastatic colonization, establishing a metastatic niche to fuel their survival, growth, and invasion. However, the underlying mechanisms in the metastatic niche are yet to be fully elucidated owing to the lack of methodologies for comprehensively studying the mechanisms of cell–cell interactions in the niche. Here, we improve a split green fluorescent protein (GFP)-based genetically encoded system to develop secretory glycosylphosphatidylinositol-anchored reconstitution-activated proteins to highlight intercellular connections (sGRAPHIC) for efficient fluorescent labeling of tissue-resident cells that neighbor on and putatively interact with cancer cells in deep tissues. The sGRAPHIC system enables the isolation of metastatic niche-associated tissue-resident cells for their characterization using a single-cell RNA sequencing platform. We use this sGRAPHIC-leveraged transcriptomic platform to uncover gene expression patterns in metastatic niche-associated hepatocytes in a murine model of liver metastasis. Among the marker genes of metastatic niche-associated hepatocytes, we identify Lgals3, encoding galectin-3, as a potential pro-metastatic factor that accelerates metastatic growth and invasion.

    DOI: 10.1038/s41467-023-43855-2

  • Direct reprogramming of human umbilical vein- and peripheral blood-derived endothelial cells into hepatic progenitor cells. Reviewed International journal

    Hiroki Inada, Miyako Udono, Kanae Matsuda-Ito, Kenichi Horisawa, Yasuyuki Ohkawa, Shizuka Miura, Takeshi Goya, Junpei Yamamoto, Masao Nagasaki, Kazuko Ueno, Daisuke Saitou, Mikita Suyama, Yoshihiko Maehara, Wataru Kumamaru, Yoshihiro Ogawa, Sayaka Sekiya, Atsushi Suzuki

    Nature communications   11 ( 1 )   5292 - 5292   2020.10

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    Recent advances have enabled the direct induction of human tissue-specific stem and progenitor cells from differentiated somatic cells. However, it is not known whether human hepatic progenitor cells (hHepPCs) can be generated from other cell types by direct lineage reprogramming with defined transcription factors. Here, we show that a set of three transcription factors, FOXA3, HNF1A, and HNF6, can induce human umbilical vein endothelial cells to directly acquire the properties of hHepPCs. These induced hHepPCs (hiHepPCs) propagate in long-term monolayer culture and differentiate into functional hepatocytes and cholangiocytes by forming cell aggregates and cystic epithelial spheroids, respectively, under three-dimensional culture conditions. After transplantation, hiHepPC-derived hepatocytes and cholangiocytes reconstitute damaged liver tissues and support hepatic function. The defined transcription factors also induce hiHepPCs from endothelial cells circulating in adult human peripheral blood. These expandable and bipotential hiHepPCs may be useful in the study and treatment of human liver diseases.

    DOI: 10.1038/s41467-020-19041-z

  • Direct Lineage Reprogramming of Mouse Fibroblasts to Acquire the Identity of Fetal Intestine-Derived Progenitor Cells. Reviewed International journal

    Shizuka Miura, Atsushi Suzuki

    Methods in molecular biology (Clifton, N.J.)   2171   231 - 236   2020.9

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    Intestinal organoids are useful models for studying the characteristics of intestinal diseases and their treatment. However, a major limiting factor in their usability is the need for donor tissue fragments or pluripotent stem cells to generate the organoids. Here, we describe an approach to generate intestinal organoids from fibroblasts, a new source. We used direct reprogramming technology to generate cells with the properties of fetal intestine-derived progenitor cells (FIPCs) from mouse embryonic fibroblasts (MEFs). These induced FIPCs (iFIPCs) can give rise to cells resembling intestinal stem cells (ISCs), henceforth referred to as induced ISCs (iISCs). These iFIPCs and iISCs form spherical and budding organoids, respectively, similar to FIPCs and ISCs. These induced intestinal organoids could be used for studies on intestinal diseases and regenerative therapy.

    DOI: 10.1007/978-1-0716-0747-3_14

  • Induction of Steatohepatitis and Liver Tumorigenesis by Enforced Snail Expression in Hepatocytes Reviewed

    Shizuka Miura, Atsushi Suzuki

    The American Journal of Pathology   190 ( 6 )   1271 - 1283   2020.6

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    DOI: 10.1016/j.ajpath.2020.02.005

    Repository Public URL: https://hdl.handle.net/2324/7173546

  • Cell Aggregation Culture Induces Functional Differentiation of Induced Hepatocyte-like Cells through Activation of Hippo Signaling. Reviewed International journal

    Junpei Yamamoto, Miyako Udono, Shizuka Miura, Sayaka Sekiya, Atsushi Suzuki

    Cell reports   25 ( 1 )   183 - 198   2018.10

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    Recent progress in direct lineage reprogramming has enabled the generation of induced hepatocyte-like (iHep) cells and revealed their potential as an alternative to hepatocytes for medical applications. However, the hepatic functions of iHep cells are insufficient compared with those of primary hepatocytes. Here, we show that cell-aggregate formation can rapidly induce growth arrest and hepatic maturation of iHep cells through activation of Hippo signaling. During formation of iHep cell aggregates, Yap inactivation is induced by actin reorganization and intercellular adhesion, leading to upregulation of Hnf1α expression in the absence of the Yap/Tead/Chd4 transcriptional repressor unit. Hnf1α then acts as a central transcription factor that regulates liver-enriched gene expression in iHep cell aggregates and induces functional differentiation of iHep cells. Moreover, iHep cell aggregates efficiently reconstitute injured liver tissues and support hepatic function after transplantation. Thus, iHep cell aggregates may provide insights into basic research and potential therapies for liver diseases.

    DOI: 10.1016/j.celrep.2018.09.010

  • Brief summary of the current protocols for generating intestinal organoids Reviewed

    Shizuka Miura, Atsushi Suzuki

    Development Growth and Differentiation   60   387 - 392   2018.8

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    Brief summary of the current protocols for generating intestinal organoids
    © 2018 Japanese Society of Developmental Biologists The intestine has fundamental functions for the maintenance of homeostasis, including food digestion and nutrient/water absorption. Although the lumen of the intestine is always exposed to pathogens, intestinal epithelial cells form monolayer sheets that act as an epithelial barrier to prevent the invasion of pathogens. Thus, disruption of the intestinal epithelial barrier causes inflammatory bowel diseases. To investigate the details of these intractable intestinal diseases, it is necessary to analyze the characteristics of intestinal epithelial cells in vitro. However, it is difficult to maintain and propagate intestinal epithelial cells in culture. Recently, intestinal organoid culture systems have been established, in which differentiated intestinal epithelial lineage cells can be continuously produced from intestinal stem cells and form epithelial organoids with crypt-like structures in long-term culture. Moreover, intestinal epithelial organoids can be generated not only from intestinal tissue-derived cells, embryonic stem cells, and induced pluripotent stem cells, but also by inducing direct conversion of nonintestinal somatic cells into intestinal epithelial cells. These intestinal organoids can be used in basic studies for understanding the mechanisms underlying intestinal development and diseases and will be applied in future transplantation therapy and drug discovery to treat intestinal diseases.

    DOI: 10.1111/dgd.12559

  • Generation of Mouse and Human Organoid-Forming Intestinal Progenitor Cells by Direct Lineage Reprogramming Reviewed

    Shizuka Miura, Atsushi Suzuki

    CELL STEM CELL   21 ( 4 )   456 - +   2017.10

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    Language:English   Publishing type:Research paper (scientific journal)  

    Intestinal organoids hold great promise as a valuable tool for studying and treating intestinal diseases. The currently available sources of human intestinal organoids, tissue fragments or pluripotent stem cells, involve invasive procedures or complex differentiation protocols, respectively. Here, we show that a set of four transcription factors, Hnf4 alpha, Foxa3, Gata6, and Cdx2, can directly reprogram mouse fibroblasts to acquire the identity of fetal intestine-derived progenitor cells (FIPCs). These induced FIPCs (iFIPCs) form spherical organoids that develop into adult-type budding organoids containing cells with intestinal stem cell properties. The resulting stem cells produce all intestinal epithelial cell lineages and undergo self-renewing cell divisions. After transplantation, the induced spherical and budding organoids can reconstitute colonic and intestinal epithelia, respectively. The same combination of four defined transcription factors can also induce human iFIPCs. This alternative approach for producing intestinal organoids may well facilitate application for disease analysis and therapy development.

    DOI: 10.1016/j.stem.2017.08.020

    Repository Public URL: https://hdl.handle.net/2324/7172621

  • Myofibroblasts Derived from Hepatic Progenitor Cells Create the Tumor Microenvironment Reviewed

    Sayaka Sekiya, Shizuka Miura, Kanae Matsuda-Ito, Atsushi Suzuki

    STEM CELL REPORTS   7 ( 6 )   1130 - 1139   2016.12

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    Hepatic progenitor cells (HPCs) appear in response to several types of chronic injury in the human and rodent liver that often develop into liver fibrosis, cirrhosis, and primary liver cancers. However, the contribution of HPCs to the pathogenesis and progression of such liver diseases remains controversial. HPCs are generally defined as cells that can differentiate into hepatocytes and cholangiocytes. In this study, however, we found that HPCs isolated from the chronically injured liver can also give rise to myofibroblasts as a third type of descendant. While myofibroblast differentiation from HPCs is not significant in culture, during tumor development, HPCs can contribute to the formation of the tumor microenvironment by producing abundant myofibroblasts that might form a niche for tumor growth and survival. Thus, HPCs can be redefined as cells with a potential for differentiation into myofibroblasts that is specifically activated during tumor formation.

    DOI: 10.1016/j.stemcr.2016.11.002

  • Kupffer cells induce Notch-mediated hepatocyte conversion in a common mouse model of intrahepatic cholangiocarcinoma Reviewed

    Maiko Terada, Kenichi Horisawa, Shizuka Miura, Yasuo Takashima, Yasuyuki Ohkawa, Sayaka Sekiya, Kanae Matsuda-Ito, Atsushi Suzuki

    SCIENTIFIC REPORTS   6   2016.10

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    Intrahepatic cholangiocarcinoma (ICC) is a malignant epithelial neoplasm composed of cells resembling cholangiocytes that line the intrahepatic bile ducts in portal areas of the hepatic lobule. Although ICC has been defined as a tumor arising from cholangiocyte transformation, recent evidence from genetic lineage-tracing experiments has indicated that hepatocytes can be a cellular origin of ICC by directly changing their fate to that of biliary lineage cells. Notch signaling has been identified as an essential factor for hepatocyte conversion into biliary lineage cells at the onset of ICC. However, the mechanisms underlying Notch signal activation in hepatocytes remain unclear. Here, using a mouse model of ICC, we found that hepatic macrophages called Kupffer cells transiently congregate around the central veins in the liver and express the Notch ligand Jagged-1 coincident with Notch activation in pericentral hepatocytes. Depletion of Kupffer cells prevents the Notch-mediated cell-fate conversion of hepatocytes to biliary lineage cells, inducing hepatocyte apoptosis and increasing mortality in mice. These findings will be useful for uncovering the pathogenic mechanism of ICC and developing prevenient and therapeutic strategies for this refractory disease.

    DOI: 10.1038/srep34691

  • Suppression of lethal-7b and miR-125a/b Maturation by Lin28b Enables Maintenance of Stem Cell Properties in Hepatoblasts Reviewed

    Yasuo Takashima, Maiko Terada, Miyako Udono, Shizuka Miura, Junpei Yamamoto, Atsushi Suzuki

    HEPATOLOGY   64 ( 1 )   245 - 260   2016.7

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    In liver development, hepatoblasts that act as hepatic stem/progenitor cells proliferate and differentiate into both hepatocytes and cholangiocytes to form liver tissues. Although numerous factors contribute to this event, little is known about the roles of microRNAs in hepatoblast proliferation and differentiation. In this study, we focused on the lineage-28 (Lin28) family proteins, which are required for microRNA regulation in pluripotent stem cells and cancer cells, and investigated their roles as regulatory factors for the properties of hepatoblasts. Conclusion: Lin28b was specifically expressed in hepatoblasts, and its suppression induced growth arrest and cholangiocyte differentiation of hepatoblasts; mechanistically, Lin28b positively regulates the expression of Lin28b itself and cell cycle-related proteins in hepatoblasts by suppressing the maturation of target microRNAs, lethal-7b and miR-125a/b, enabling maintenance of the stem cell properties of hepatoblasts, such as their capabilities for proliferation and bi-lineage differentiation, during liver development.

    DOI: 10.1002/hep.28548

  • Rapid cell-fate conversion of mouse fibroblasts into hepatocyte-like cells Reviewed

    Miura Shizuka, Suzuki Atsushi

    Inflammation and Regeneration   34 ( 5 )   211 - 216   2014.11

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    Rapid cell-fate conversion of mouse fibroblasts into hepatocyte-like cells
    Recent progress in studies on direct cell-fate conversion of differentiated somatic cells into other cell types, which is known as "direct reprogramming", is expected to lead to innovations in health care. In our previous study, we found that three specific combinations of two transcription factors, comprising Hnf4α plus Foxa1, Foxa2, or Foxa3, were able to induce conversion of mouse fibroblasts into functional hepatocyte-like cells. These induced hepatocyte-like (iHep) cells will be useful for developing regenerative therapies for liver diseases and examining the pharmacological effects of drugs. However, to evaluate the potential utility of iHep cells, the phenomena involved in the direct conversion of fibroblasts into iHep cells should be examined in detail. Thus, in this study, we sequentially analyzed the early stage of fibroblast conversion into iHep cells after infection with retroviruses expressing Hnf4α and Foxa3. Our data demonstrated that the conversion into iHep cells began within 2 days after introduction of the transgenes into fibroblasts, and the number of iHep cells increased gradually as the culture progressed. The rapid cell-fate conversion of fibroblasts into iHep cells and stable expansion of iHep cells are two pieces of evidence suggesting the utility of iHep cells for cell transplantation therapy, bioartificial liver development, and screening of drugs for patients with liver diseases, which require many hepatocytes within a short period of time.

    DOI: 10.2492/inflammregen.34.211

  • Acquisition of lipid metabolic capability in hepatocyte-like cells directly induced from mouse fibroblasts. Reviewed

    Miura S, Suzuki A

    Frontiers in cell and developmental biology   2   43   2014.8

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    Acquisition of lipid metabolic capability in hepatocyte-like cells directly induced from mouse fibroblasts.

    DOI: 10.3389/fcell.2014.00043

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Presentations

  • 肝細胞誘導におけるリプログラミング過程の観察と解析

    三浦静, 関谷明香, 鈴木淳史

    第19回肝細胞研究会  2012.6 

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    Language:Japanese  

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  • 肝細胞におけるsnailの過剰発現は肝細胞癌を誘導する

    三浦静, 鈴木淳史

    第25回肝細胞研究会  2018.7 

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  • ダイレクトリプログラミングによるオルガノイド形成能を有するマウスおよびヒト腸前駆細胞の作製

    三浦静, 鈴木淳史

    第17回日本再生医療学会  2018.3 

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  • Overexpression of transcription factor Snail induces liver tumor formation: International conference

    三浦静, 鈴木淳史

    Keystone symposia  2016.3 

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    Overexpression of transcription factor Snail induces liver tumor formation:

  • iHep細胞研究から見出された肝細胞分化の新規制御機構

    三浦静, 鈴木淳史

    第14回日本再生医療学会総会  2015.3 

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  • iHep細胞研究から見出された肝細胞分化の新規制御機構

    三浦静, 関谷明香, 鈴木淳史

    第21回肝細胞研究会  2014.6 

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  • Analysis of hepatic lipid metabolism using iHep cells International conference

    三浦静, 鈴木淳史

    The 23rd Hot Spring Harbor International Symposium held jointly with The 3rd Grants for Excellent Graduate Schools’ International Symposium  2013.11 

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    Analysis of hepatic lipid metabolism using iHep cells

  • Analysis of reprogramming process from fibroblasts to induced hepatocyte-like cells International conference

    三浦静, 関谷明香, 鈴木淳史

    Epithelial tubulology  2013.6 

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    Analysis of reprogramming process from fibroblasts to induced hepatocyte-like cells

  • iHep細胞を用いた脂質代謝機能の解析

    三浦静, 鈴木淳史

    第36回日本分子生物学会  2013.12 

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  • nalysis of hepatic lipid metabolism using iHep cells International conference

    三浦静, 鈴木淳史

    The 20th Annual Meeting of the Japanese Society for the Research of Hepatic Cells  2013.9 

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    nalysis of hepatic lipid metabolism using iHep cells

  • Induction of functional hepatocytes from mouse fibroblasts Invited International conference

    三浦静, 鈴木淳史

    The International Liver Congress by EASL  2012.4 

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    Induction of functional hepatocytes from mouse fibroblasts

  • 肝細胞誘導におけるリプログラミング過程の観察と解析

    三浦静, 関谷明香, 鈴木淳史

    第35回日本分子生物学会  2012.12 

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Professional Memberships

  • 再生医療学会

  • 分子生物学会

  • 肝細胞研究会

Research Projects

  • ダイレクトリプログラミングを利用したヒト食道上皮細胞の作製

    Grant number:23K17199  2023 - 2024

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Early-Career Scientists

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    Authorship:Principal investigator  Grant type:Scientific research funding

  • ダイレクトリプログラミングによる血液由来腸前駆細胞の作製

    Grant number:21K18039  2021 - 2023

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Early-Career Scientists

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    Authorship:Principal investigator  Grant type:Scientific research funding

  • 腸前駆細胞直接誘導法を利用したヒト成体型腸上皮オルガノイドの作製

    2018 - 2019

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Young Scientists (Start-up)

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    Authorship:Principal investigator  Grant type:Scientific research funding

  • ダイレクトリプログラミングによるヒト腸幹細胞の作製

    Grant number:16J02459  2016 - 2017

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for JSPS Fellows

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    Grant type:Scientific research funding

Social Activities

  • 九州大学病院【サイエンスカフェ 】ジェネティック・クエスト Episode2: あなたの大切な「生命」のクローンを作りたいですか?

    九州大学病院 臨床遺伝医療部  九州大学  2024.2

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    Audience:General, Scientific, Company, Civic organization, Governmental agency

    Type:Lecture