Updated on 2025/06/15

Information

 

写真a

 
TERAMOTO TAKAMASA
 
Organization
Faculty of Agriculture Department of Bioscience and Biotechnology Assistant Professor
Graduate School of Bioresource and Bioenvironmental Sciences Department of Bioscience and Biotechnology(Concurrent)
School of Agriculture Department of Bioresource and Bioenvironment(Concurrent)
Title
Assistant Professor
Profile
硫酸転移酵素、RNA結合タンパク質、糖構成関連酵素などのタンパク質を中心にX線結晶構造解析を行い、その酵素機能の構造基盤を解明する。また積極的に他学部との共同研究を行い、構造生物学の観点から支援する。
Homepage

Research Areas

  • Life Science / Structural biochemistry

  • Life Science / Molecular biology

  • Life Science / Applied biochemistry

Degree

  • Ph.D.(Systems Life Sciences)

Research History

  • National Institute of Environmental Health Sciences (NIEHS)/NIH(米国)   

    2010.10 - 2018.8

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    Country:United States

Education

  • Kyushu University   システム生命科学府  

    2006.4 - 2009.3

  • Kyushu University   生物資源環境科学府  

    2004.4 - 2006.3

  • Kyushu University   農学部  

    2000.4 - 2004.3

Research Interests・Research Keywords

  • Research theme: The Structural biology of RNA-binding proteins and sulfotransferases

    Keyword: Structural biology

    Research period: 2020.2

Awards

  • 日本農芸化学会西日本支部奨励賞(一般)

    2022.1   日本農芸化学会西日本支部   エンザイム型リボヌクレアーゼPの構造解析

Papers

  • Non-conventional Octameric Structure of C-phycocyanin Reviewed International journal

    @Takuo Minato, @Takamasa Teramoto, @Naruhiko Adachi, #Nguyen Khac Hung, #Kaho Yamada, @Masato Kawasaki, @Masato Akutsu, @Toshio Moriya, @Toshiya Senda, @Seiji Ogo, @Yoshimitsu Kakuta, @Ki-Seok Yoon

    Communications Biology   2021.11

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    Language:English   Publishing type:Research paper (scientific journal)  

  • Minimal protein-only RNase P structure reveals insights into tRNA precursor recognition and catalysis Reviewed International journal

    @Takamasa Teramoto, #Takeshi Koyasu,@ Naruhiko Adachi, @Masato Kawasaki, @Toshio Moriya, @Tomoyuki Numata, @Toshiya Senda, @Yoshimitsu Kakuta

    J Biol Chem   297 ( 3 )   2021.9

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    DOI: 10.1016/j.jbc.2021.101028.

  • Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA Reviewed International journal

    @Teramoto T., b,Kaitany K.J., @Kakuta Y., @Kimura M., Fierke C.A., Hall T.M.T.

    Nucleic Acids Research   2020.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1093/nar/gkaa627

  • The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition Reviewed

    Joel V Tamayo, Takamasa Teramoto, Seema Chatterjee, Traci M Tanaka Hall, Elizabeth R Gavis

    Cell Reports   19 ( 1 )   150 - 161   2017.4

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    DOI: 10.1016/j.celrep.2017.03.022

  • Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction Reviewed

    Takamasa Teramoto, Yukari Fujikawa, Yoshirou Kawaguchi, Katsuhisa Kurogi, Masayuki Soejima, Rumi Adachi, Yuichi Nakanishi, Emi Mishiro-Sato, Ming Cheh Liu, Yoichi Sakakibara, Masahito Suiko, Makoto Kimura, Yoshimitsu Kakuta

    Nature communications   4   2013.4

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    DOI: 10.1038/ncomms2593

  • Structural insights into lab-coevolved RNA-RBP pairs and applications of synthetic riboswitches in cell-free system

    Fukunaga K., Teramoto T., Nakashima M., Ohtani T., Katsuki R., Matsuura T., Yokobayashi Y., Kakuta Y.

    Nucleic Acids Research   53 ( 6 )   2025.4   ISSN:03051048

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    CS1-LS4 and CS2-LS12 are ultra-high affinity and orthogonal RNA-protein pairs that were identified by PD-SELEX (Phage Display coupled with Systematic Evolution of Ligands by EXponential enrichment). To investigate the molecular basis of the lab-coevolved RNA-RBP pairs, we determined the structures of the CS1-LS4 and CS2-LS12 complexes and the LS12 homodimer in an RNA-free state by X-ray crystallography. The structural analyses revealed that the lab-coevolved RNA-RBPs have acquired unique molecular recognition mechanisms, whereas the overall structures of the RNP complexes were similar to the typical kink-turn RNA-L7Ae complex. The orthogonal RNA-RBP pairs were applied to construct high-performance cell-free riboswitches that regulate translation in response to LS4 or LS12. In addition, by using the orthogonal protein-responsive switches, we generated an AND logic gate that outputs staphylococcal γ-hemolysin in cell-free system and carried out hemolysis assay and calcein leakage assay using rabbit red blood cells and artificial cells, respectively.

    DOI: 10.1093/nar/gkaf212

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  • The strategy used by naïve anti-PEG antibodies to capture flexible and featureless PEG chains

    Liu, YW; Mori, T; Ito, Y; Kuroki, K; Hayashi, S; Kohda, D; Shimizu, T; Ishida, T; Roffler, SR; Kaneko, MK; Kato, Y; Arimori, T; Teramoto, T; Takemura, K; Ishibashi, K; Katayama, Y; Maenaka, K; Kakuta, Y; Kitao, A; Mori, T

    JOURNAL OF CONTROLLED RELEASE   380   396 - 403   2025.4   ISSN:0168-3659 eISSN:1873-4995

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    Polyethylene glycol (PEG) is widely used as a standard stealth polymer, although the induction of anti-PEG antibodies and consequent effects have drawn attention in recent years. To date, several anti-PEG antibodies induced by PEG-modified proteins via the T cell-dependent (TD) pathway, in which affinity maturation occurs, have been reported. In contrast, structures of the naïve anti-PEG antibodies before affinity maturation have not been described in the literature. Here, to understand the details of the naïve anti-PEG antibodies capturing PEG, we studied a naïve anti-PEG antibody induced by a PEG-modified liposome in the absence of affinity maturation via the T cell-independent (TI) pathway. The mutation levels, structures as well as in vitro and in silico binding properties of TI and TD anti-PEG antibodies were compared. The TI anti-PEG antibody showed no mutation and a low binding affinity toward PEG, meanwhile, it allowed PEG chain sliding and weak interaction with the terminal group. Furthermore, the naïve anti-PEG antibodies may obtain high affinities by forming tunnel structures via minimal mutations. This research provides new insights into polymer–antibody interactions, which can facilitate the development of novel stealth polymers that can avoid antibody induction.

    DOI: 10.1016/j.jconrel.2025.02.001

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  • Vacuolar sterol β-glucosidase EGCrP2/Sgl1 deficiency in <i><bold>Cryptococcus neoformans</bold></i>: Dysfunctional autophagy and Mincle-dependent immune activation as targets of novel antifungal strategies

    Watanabe, T; Nagai, M; Ishibashi, Y; Iwasaki, M; Mizoguchi, M; Nagata, M; Imai, T; Takato, K; Imamura, A; Kakuta, Y; Teramoto, T; Tani, M; Matsuda, J; Ishida, H; Yamasaki, S; Okino, N; Ito, M

    PLOS PATHOGENS   21 ( 4 )   e1013089   2025.4   ISSN:1553-7366 eISSN:1553-7374

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    Cryptococcus neoformans (Cn) is a fungal pathogen responsible for cryptococcal meningitis, which accounts for 15% of AIDS-related deaths. Recent studies have shown that the absence of sterol β-glucosidase (EGCrP2, also known as Sgl1) in Cn significantly attenuates its virulence in a mouse infection model. However, the mechanisms underlying this virulence attenuation remain unclear. In this study, we observed a significant increase in dead cells after 3 days of culture of SGL1-deficient Cn (sgl1Δ, KO) at 37°C, compared with wild-type (WT) and SGL1-reconstituted Cn (sgl1Δ::SGL1, RE). qPCR analysis of WT, KO, and RE strains indicated that autophagy-related genes (ATGs) were significantly downregulated in KO strain. Atg8-dependent GFP translocation to the vacuole was significantly delayed in KO strain under starvation conditions. This autophagy dysfunction was identified as the primary cause of the increased cell death observed in KO strain under nitrogen starvation conditions at 37°C. EGCrP2/Sgl1 is predominantly localized in the vacuoles of Cn, and its deletion results in the accumulation of not only ergosterol β-glucoside (EG), as previously reported, but also acylated EGs (AEGs). AEGs were much more potent than EG in activating the C-type lectin receptor Mincle in mice, rats, and humans. AEGs were released from KO strain via extracellular vesicles (EVs). Chemically synthesized 18:1-EG and EVs derived from KO strain, but not WT or RE strains, enhanced cytokine production in murine and human dendritic cells. AEG-dependent cytokine production was markedly reduced in dendritic cells from Mincle-deficient mice, and the number of KO strain in lung tissue from Mincle-deficient mice was substantially higher than wild-type mice on day 3 after infection. Intranasal administration of acylated sitosterol β-glucoside increased Mincle expression and cytokine production and reduced the Cn burden in lung tissue of Cn-infected mice. These findings suggest that autophagy dysfunction in KO strain and the host innate immune response via the AEG-dependent Mincle activation are critical in reducing Cn virulence in mice.

    DOI: 10.1371/journal.ppat.1013089

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  • Fine-tuning of the PPR protein directs the RNA editing activity toward C-to-U or U-to-C conversion

    Ichinose, M; Teramoto, T; Nakamura, I; Shimajiri, Y; Yagi, Y; Gutmann, B

    SCIENTIFIC REPORTS   15 ( 1 )   6288   2025.2   ISSN:2045-2322

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    A subfamily of pentatricopeptide repeat (PPR) proteins, known as PPR-DYW:PG, catalyzes the cytidine to uridine (C-to-U) RNA editing in plant organelles. A related PPR subfamily, PPR-DYW:KP, catalyzes the uridine to cytidine (U-to-C) reaction, via a crosslinking mechanism involving a lysine residue. We demonstrate that Lys88 in the DYW:KP domain is essential for the U-to-C editing activity of PPR-DYW:KP proteins. Substituting Lys88 with other amino acids in designer proteins switches the protein activity to C-to-U and prevents crosslinking with the edited RNA. However, this mutation leads to C-to-U off-target editing downstream the targeted site. Finally, other modifications can modulate the catalytic activity and alter the type of reaction catalyzed by the DYW domain. Altogether, our results suggest that subtle modifications in the DYW domain can influence the position of the edited nucleotide and the type of RNA editing reaction.

    DOI: 10.1038/s41598-025-90722-9

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  • A novel model for analyzing cancer extravasation based on high-resolution live imaging

    Morita, M; Fujii, R; Ryuno, A; Morimoto, M; Inoko, A; Ikenouchi, J; Hayashi, Y; Atsuta, Y; Teramoto, T; Saito, D

    CANCER SCIENCE   116   1429 - 1429   2025.1   ISSN:1347-9032 eISSN:1349-7006

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  • Engineering rice Nramp5 modifies cadmium and manganese uptake selectivity using yeast assay system

    Inoue, J; Teramoto, T; Kazama, T; Nakamura, T

    FRONTIERS IN PLANT SCIENCE   15   1482099   2024.11   ISSN:1664-462X

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    Cd is a seriously hazardous heavy metal for both plants and humans and international regulations regarding Cd intake have become stricter in recent years. Three-quarters of the Cd intake comes from plant-based foods, half of which comes from cereals. Therefore, it is anticipated that the Cd uptake efficiency of cereals, including rice, a staple crop in Asia, will be reduced. Natural resistance-associated macrophage protein (Nramp) is the principal transporter involved in the uptake and translocation of metal ions in various plants. In rice, OsNramp5 is a transporter of Mn, which is an essential micronutrient for plant growth, and is responsible for Cd uptake. Although several attempts have been made to engineer the metal uptake characteristics of OsNramp5, in many cases, both Cd and Mn uptake efficiencies are impaired. Therefore, in this study, we engineered OsNramp5 to reduce Cd uptake while retaining Mn uptake efficiency for low-Cd rice production. OsNramp5 was engineered using amino acid substitution(s) at the 232<sup>nd</sup> Ala and 235<sup>th</sup> Met of OsNramp5, which have been suggested to be key residues for metal uptake efficiency and/or selectivity by structural analyses of bacterial Nramps. The metal uptake efficiency was first analyzed using a yeast model assay system. Several mutants showed less than 8.6% Cd and more than 64.1% Mn uptake efficiency compared to the original OsNramp5. The improved metal uptake characteristics were confirmed by direct measurement of the metal content in the yeast using inductively coupled plasma optical emission spectroscopy. Notably, several mutants reduced Cd uptake efficiency to the background level while retaining more than 64.7% Mn uptake efficiency under conditions mimicking heavily polluted soils in the world. In addition, computational structural modeling suggested requirements for the spatial and chemical properties of the metal transport tunnel and metal-binding site, respectively, for Cd/Mn uptake efficiency.

    DOI: 10.3389/fpls.2024.1482099

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  • Substrate binding and catalytic mechanism of UDP-α-D-galactofuranose: β-galactofuranoside β-(1→5)-galactofuranosyltransferase GfsA.

    Oka T, Okuno A, Hira D, Teramoto T, Chihara Y, Hirata R, Kadooka C, Kakuta Y

    PNAS nexus   3 ( 11 )   pgae482   2024.11

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    DOI: 10.1093/pnasnexus/pgae482

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  • Crystal structure of activating sulfotransferase SgdX2 involved in biosynthesis of secondary metabolite sungeidine

    #Mori, T; @Teramoto, T; @Kakuta, Y

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   711   149891   2024.6   ISSN:0006-291X eISSN:1090-2104

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    Authorship:Lead author, Corresponding author   Language:English   Publisher:Biochemical and Biophysical Research Communications  

    Microorganisms synthesize a plethora of complex secondary metabolites, many of which are beneficial to human health, such as anticancer agents and antibiotics. Among these, the Sungeidines are a distinct class of secondary metabolites known for their bulky and intricate structures. They are produced by a specific biosynthetic gene cluster within the genome of the soil-dwelling actinomycete Micromonospora sp. MD118. A notable enzyme in the Sungeidine biosynthetic pathway is the activating sulfotransferase SgdX2. In this pathway, SgdX2 mediates a key sulfation step, after which the product undergoes spontaneous dehydration to yield a Sungeidine compound. To delineate the structural basis for SgdX2's substrate recognition and catalytic action, we have determined the crystal structure of SgdX2 in complex with its sulfate donor product, 3′-phosphoadenosine 5′-phosphate (PAP), at a resolution of 1.6 Å. Although SgdX2 presents a compact overall structure, its core elements are conserved among other activating sulfotransferases. Our structural analysis reveals a unique substrate-binding pocket that accommodates bulky, complex substrates, suggesting a specialized adaptation for Sungeidine synthesis. Moreover, we have constructed a substrate docking model that provides insights into the molecular interactions between SgdX2 and Sungeidine F, enhancing our understanding of the enzyme's specificity and catalytic mechanism. The model supports a general acid-base catalysis mechanism, akin to other sulfotransferases, and underscores the minor role of disordered regions in substrate recognition. This integrative study of crystallography and computational modeling advances our knowledge of microbial secondary metabolite biosynthesis and may facilitate the development of novel biotechnological applications.

    DOI: 10.1016/j.bbrc.2024.149891

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  • Crystal structure of mango α1,3/α1,4-fucosyltransferase elucidates unique elements that regulate Lewis A-dominant oligosaccharide assembly

    Okada, T; @Teramoto, T; Ihara, H; Ikeda, Y; @Kakuta, Y

    GLYCOBIOLOGY   34 ( 5 )   2024.3   ISSN:0959-6658 eISSN:1460-2423

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    Authorship:Lead author   Language:English   Publisher:Glycobiology  

    In various organisms, α1,3/α1,4-fucosyltransferases (CAZy GT10 family enzymes) mediate the assembly of type I (Galβ1,3GlcNAc) and/or type II (Galβ1,4GlcNAc)-based Lewis structures that are widely distributed in glycoconjugates. Unlike enzymes of other species, plant orthologues show little fucosyltransferase activity for type II-based glycans and predominantly catalyze the assembly of the Lewis A structure [Galβ1,3(Fucα1,4)GlcNAc] on the type I disaccharide unit of their substrates. However, the structural basis underlying this unique substrate selectivity remains elusive. In this study, we investigated the structure–function relationship of MiFUT13A, a mango α1,3/α1,4-fucosyltransferase. The prepared MiFUT13A displayed distinct α1,4-fucosyltransferase activity. Consistent with the enzymatic properties of this molecule, X-ray crystallography revealed that this enzyme has a typical GT-B fold-type structure containing a set of residues that are responsible for its SN2-like catalysis. Site-directed mutagenesis and molecular docking analyses proposed a rational binding mechanism for type I oligosaccharides. Within the catalytic cleft, the pocket surrounding Trp121 serves as a binding site, anchoring the non-reducing terminal β1,3-galactose that belongs to the type I disaccharide unit. Furthermore, Glu177 was postulated to function as a general base catalyst through its interaction with the 4-hydroxy group of the acceptor N-acetylglucosamine residue. Adjacent residues, specifically Thr120, Thr157 and Asp175 were speculated to assist in binding of the reducing terminal residues. Intriguingly, these structural elements were not fully conserved in mammalian orthologue which also shows predominant α1,4-fucosyltransferase activity. In conclusion, we have proposed that MiFUT13A generates the Lewis A structure on type I glycans through a distinct mechanism, divergent from that of mammalian enzymes.

    DOI: 10.1093/glycob/cwae015

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  • Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of the tick anticoagulant protein madanin

    Yoshimura M., Teramoto T., Asano H., Iwamoto Y., Kondo M., Nishimoto E., Kakuta Y.

    Journal of Biological Chemistry   300 ( 3 )   105748   2024.3   ISSN:00219258

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    Ticks pose a substantial public health risk as they transmit various pathogens. This concern is related to the adept blood-sucking strategy of ticks, underscored by the action of the anticoagulant, madanin, which is known to exhibit an approximately 1000-fold increase in anticoagulant activity following sulfation of its two tyrosine residues, Tyr51 and Tyr54. Despite this knowledge, the molecular mechanism underlying sulfation by tick tyrosylprotein sulfotransferase (TPST) remains unclear. In this study, we successfully prepared tick TPST as a soluble recombinant enzyme. We clarified the method by which this enzyme proficiently sulfates tyrosine residues in madanin. Biochemical analysis using a substrate peptide based on madanin and tick TPST, along with the analysis of the crystal structure of the complex and docking simulations, revealed a sequential sulfation process. Initial sulfation at the Tyr51 site augments binding, thereby facilitating efficient sulfation at Tyr54. Beyond direct biochemical implications, these findings considerably improve our understanding of tick blood-sucking strategies. Furthermore, combined with the utility of modified tick TPST, our findings may lead to the development of novel anticoagulants, promising avenues for thrombotic disease intervention and advancements in the field of public health.

    DOI: 10.1016/j.jbc.2024.105748

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  • Disassembly and reassembly of the non-conventional thermophilic C-phycocyanin

    Nguyen, HK; Minato, T; Teramoto, T; Ogo, S; Kakuta, Y; Yoon, KS

    JOURNAL OF BIOSCIENCE AND BIOENGINEERING   137 ( 3 )   179 - 186   2024.3   ISSN:1389-1723 eISSN:1347-4421

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    C-phycocyanin (CPC), which contains open-chain tetrapyrroles, is a major light-harvesting red-fluorescent protein with an important role in aquatic photosynthesis. Recently, we reported a non-conventional CPC from Thermoleptolyngbya sp. O-77 (CPCO77) that contains two different structures, i.e., a hexameric structure and a non-conventional octameric structure. However, the assembly and disassembly mechanisms of the non-conventional octameric form of CPC remain unclear. To understand this assembly mechanism, we performed an in vitro experiment to study the disassembly and reassembly behaviors of CPC using isolated CPC subunits. The dissociation of the CPCO77 subunit was performed using a Phenyl-Sepharose column in 20 mM potassium phosphate buffer (pH 6.0) containing 7.0 M urea. For the first time, crystals of isolated CPC subunits were obtained and analyzed after separation. After the removal of urea from the purified α and β subunits, we performed an in vitro reassembly experiment for CPC and analyzed the reconstructed CPC using spectrophotometric and X-ray crystal structure analyses. The crystal structure of the reassembled CPC was nearly identical to that of the original CPCO77. The findings of this study indicate that the octameric CPCO77 is a naturally occurring form in the thermophilic cyanobacterium Thermoleptolyngbya sp. O-77.

    DOI: 10.1016/j.jbiosc.2023.12.015

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  • A new type of sulfation reaction: C-sulfonation for α,β-unsaturated carbonyl groups by a novel sulfotransferase SULT7A1

    Kurogi, K; Sakakibara, Y; Hashiguchi, T; @Kakuta, Y; #Kanekiyo, M; @Teramoto, T; Fukushima, T; Bamba, T; Matsumoto, J; Fukusaki, E; Kataoka, H; Suiko, M

    PNAS NEXUS   3 ( 3 )   pgae097   2024.2   eISSN:2752-6542

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    Cytosolic sulfotransferases (SULTs) are cytosolic enzymes that catalyze the transfer of sulfonate group to key endogenous compounds, altering the physiological functions of their substrates. SULT enzymes catalyze the O-sulfonation of hydroxy groups or N-sulfonation of amino groups of substrate compounds. In this study, we report the discovery of C-sulfonation of α,β-unsaturated carbonyl groups mediated by a new SULT enzyme, SULT7A1, and human SULT1C4. Enzymatic assays revealed that SULT7A1 is capable of transferring the sulfonate group from 3′-phosphoadenosine 5′-phosphosulfate to the α-carbon of α,β-unsaturated carbonyl-containing compounds, including cyclopentenone prostaglandins as representative endogenous substrates. Structural analyses of SULT7A1 suggest that the C-sulfonation reaction is catalyzed by a novel mechanism mediated by His and Cys residues in the active site. Ligand-activity assays demonstrated that sulfonated 15-deoxy prostaglandin J2 exhibits antagonist activity against the prostaglandin receptor EP2 and the prostacyclin receptor IP. Modification of α,β-unsaturated carbonyl groups via the new prostaglandin-sulfonating enzyme, SULT7A1, may regulate the physiological function of prostaglandins in the gut. Discovery of C-sulfonation of α,β-unsaturated carbonyl groups will broaden the spectrum of potential substrates and physiological functions of SULTs.

    DOI: 10.1093/pnasnexus/pgae097

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  • Orthogonality of α-Sulfoquinovosidase in Human Cells and Development of Its Fluorescent Substrate

    Yoshida, R; Kaguma, R; Kaneko, R; Matsuo, I; Yoritate, M; Hirai, G; Teramoto, T; Kakuta, Y; Minamihata, K; Kamiya, N; Nii, T; Kishimura, A; Mori, T; Katayama, Y

    SENSORS AND MATERIALS   36 ( 8 )   3227 - 3238   2024   ISSN:0914-4935

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    Human orthogonal enzymes (HOEs) do not show the same activities as the endogenous enzymes of human cells and thus are useful as amplification enzymes to detect antigen proteins in biological samples. Here, we evaluate a new HOE from Escherichia coli, α-sulfoquinovosidase (α-SQase). We confirmed that the activity of α-SQase did not exist in examined human cell lines, and thus it was applicable to live-cell enzyme-linked immunosorbent assay (ELISA) in which the antigen membrane protein on cells was detected without inactivating endogenous enzymes, a pretreatment required for cell ELISA using conventional amplification enzymes. Here, we also developed a fluorescent substrate for α-SQase whose active residue is located at the end of the narrow, deep pocket of the substrate recognition site. The designed methylumbelliferyl substrate with a hydroxyl benzyl alcohol linker showed a similar reactivity to the p-nitrophenol substrate, a good substrate for α-SQase.

    DOI: 10.18494/SAM4816

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  • Crystal structure of<i> Arabidopsis</i><i> thaliana</i> sulfotransferase SOT16 involved in glucosinolate biosynthesis

    Iwamoto, Y; Saito, S; Teramoto, T; Maruyama-Nakashita, A; Kakuta, Y

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   677   149 - 154   2023.10   ISSN:0006-291X eISSN:1090-2104

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    Glucosinolates (GSLs), a class of secondary metabolites found in Brassicaceae plants, play important roles in plant defense and contribute distinct flavors and aromas when used as food ingredients. Following tissue damage, GSLs undergo enzymatic hydrolysis to release bioactive volatile compounds. Understanding GSL biosynthesis and enzyme involvement is crucial for improving crop quality and advancing agriculture. Plant sulfotransferases (SOTs) play a key role in the final step of GSL biosynthesis by transferring sulfate groups to the precursor molecules. In the present study, we investigated the enzymatic reaction mechanism and broad substrate specificity of Arabidopsis thaliana sulfotransferase AtSOT16, which is involved in GSL biosynthesis, using crystal structure analysis. Our analysis revealed the specific catalytic residues involved in the sulfate transfer reaction and supported the hypothesis of a concerted acid-base catalytic mechanism. Furthermore, the docking models showed a strong correlation between the substrates with high predicted binding affinities and those experimentally reported to exhibit high activity. These findings provide valuable insights into the enzymatic reaction mechanisms and substrate specificity of GSL biosynthesis. The information obtained in this study may contribute to the development of novel strategies for manipulating GSL synthesis pathways in Brassica plants and has potential agricultural applications.

    DOI: 10.1016/j.bbrc.2023.08.020

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  • Crystal structure of a unique activating sulfotransferase SgdX2 involved in the sungeidine biosynthesis

    Mori, T; Teramoto, T; Kakuta, Y

    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES   79   C847 - C847   2023.8   ISSN:2053-2733

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  • Crystal structure of adenosine 5'-phosphosulfate kinase isolated from Archaeoglobus fulgidus

    #Kawakami, T; @Teramoto, T; @Kakuta, Y

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   643   105 - 110   2023.2   ISSN:0006-291X eISSN:1090-2104

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    Authorship:Corresponding author   Language:English   Publisher:Biochemical and Biophysical Research Communications  

    The 3′-phosphoadenosine-5′-phosphosulfate (PAPS) molecule is essential during enzyme-catalyzed sulfation reactions as a sulfate donor and is an intermediate in the reduction of sulfate to sulfite in the sulfur assimilation pathway. PAPS is produced through a two-step reaction involving ATP sulfurylase and adenosine 5′-phosphosulfate (APS) kinase enzymes/domains. However, archaeal APS kinases have not yet been characterized and their mechanism of action remains unclear. Here, we first structurally characterized APS kinase from the hyperthermophilic archaeon Archaeoglobus fulgidus, (AfAPSK). We demonstrated the PAPS production activity of AfAPSK at the optimal growth temperature (83 °C). Furthermore, we determined the two crystal structures of AfAPSK: ADP complex and ATP analog adenylyl-imidodiphosphate (AMP-PNP)/Mg2+/APS complex. Structural and complementary mutational analyses revealed the catalytic and substrate recognition mechanisms of AfAPSK. This study also hints at the molecular basis behind the thermal stability of AfAPSK.

    DOI: 10.1016/j.bbrc.2022.12.081

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  • Construction of a Versatile, Programmable RNA-Binding Protein Using Designer PPR Proteins and Its Application for Splicing Control in Mammalian Cells

    Yagi, Y; @Teramoto, T; Kaieda, S; Imai, T; Sasaki, T; Yagi, M; Maekawa, N; @Nakamura, T

    CELLS   11 ( 22 )   2022.11   eISSN:2073-4409

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    Language:English   Publisher:Cells  

    RNAs play many essential roles in gene expression and are involved in various human diseases. Although genome editing technologies have been established, the engineering of sequence-specific RNA-binding proteins that manipulate particular cellular RNA molecules is immature, in contrast to nucleotide-based RNA manipulation technology, such as siRNA- and RNA-targeting CRISPR/Cas. Here, we demonstrate a versatile RNA manipulation technology using pentatricopeptide-repeat (PPR)-motif-containing proteins. First, we developed a rapid construction and evaluation method for PPR-based designer sequence-specific RNA-binding proteins. This system has enabled the steady construction of dozens of functional designer PPR proteins targeting long 18 nt RNA, which targets a single specific RNA in the mammalian transcriptome. Furthermore, the cellular functionality of the designer PPR proteins was first demonstrated by the control of alternative splicing of either a reporter gene or an endogenous CHK1 mRNA. Our results present a versatile protein-based RNA manipulation technology using PPR proteins that facilitates the understanding of unknown RNA functions and the creation of gene circuits and has potential for use in future therapeutics.

    DOI: 10.3390/cells11223529

    Web of Science

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    PubMed

  • Crystal structure of endocrine-disrupting chemical bisphenol A and estrogen-related receptor γ. Invited Reviewed International journal

    Ayami Matsushima, Takamasa Teramoto, Yoshimitsu Kakuta

    Journal of biochemistry   171 ( 1 )   23 - 25   2022.1   ISSN:0021-924X eISSN:1756-2651

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Journal of Biochemistry  

    The human estrogen-related receptor γ(ERRγ) is an orphan nuclear receptor. The ERRγbehaves as a constitutive activator of transcription and plays a key role in controlling mitochondrial energy production and energy metabolism. Bisphenol A (BPA) is used mainly in producing polycarbonate plastics and epoxy resins, but it is known as an endocrine disruptor and strongly binds to ERRγ. We determined the crystal structure of ERRγin complex with BPA. Our structure revealed the molecular mechanism of BPA recognition by ERRγ, in which BPA is well anchored to its ligand-binding pocket. Our structure is the first report of the complex between a nuclear receptor and endocrine disruptor BPA. This structural analysis had a profound impact on subsequent studies of endocrine disruptors.

    DOI: 10.1093/jb/mvab145

    Web of Science

    Scopus

    PubMed

  • The crystal structure of mouse SULT2A8 reveals the mechanism of 7α-hydroxyl, bile acid sulfation Reviewed International journal

    Teramoto T., Nishio T., Kurogi K. ,Sakakibara Y., Kakuta Y.

    Biochemical and Biophysical Research Communications   2021.7

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  • Nop9 recognizes structured and single-stranded RNA elements of preribosomal RNA Reviewed International journal

    Jun Zhang, Takamasa Teramoto, Chen Qiu, Robert N. Wine, Lauren E. Gonzalez, Susan J. Baserga, Traci M.T. Hall

    RNA   26 ( 8 )   1049 - 1059   2020.8

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    Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.1261/rna.075416.120

  • Biochemical and structural characterization of a thermostable Dps protein with His-type ferroxidase centers and outer metal-binding sites Reviewed International journal

    Takuo Minato, Takamasa Teramoto, Yoshimitsu Kakuta, Seiji Ogo, Ki-Seok Yoon

    FEBS OPEN BIO   10 ( 7 )   1219 - 1229   2020.7

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    Language:Japanese   Publishing type:Research paper (scientific journal)  

    DOI: 10.1002/2211-5463.12837

  • Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR Reviewed

    Zakaria Omahdi, Yuto Horikawa, Masamichi Nagae, Kenji Toyonaga, Akihiro Imamura, Koichi Takato, Takamasa Teramoto, Hideharu Ishida, Yoshimitsu Kakuta, Sho Yamasaki

    Journal of Biological Chemistry   295 ( 17 )   5807 - 5817   2020.4

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1074/jbc.RA120.012491

  • Δ4-3-ketosteroids as a new class of substrates for the cytosolic sulfotransferases Reviewed

    Takuyu Hashiguchi, Katsuhisa Kurogi, Takehiko Shimohira, Takamasa Teramoto, Ming Cheh Liu, Masahito Suiko, Yoichi Sakakibara

    Biochimica et Biophysica Acta - General Subjects   1861 ( 11 )   2883 - 2890   2017.11

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    DOI: 10.1016/j.bbagen.2017.08.005

  • The molecular basis for ANE syndrome revealed by the large ribosomal subunit processome interactome Reviewed

    Kathleen L McCann, Takamasa Teramoto, Jun Zhang, Traci M Tanaka Hall, Susan J Baserga

    eLife   5   2016.4

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.7554/eLife.16381

  • On the similar spatial arrangement of active site residues in PAPS-dependent and phenolic sulfate-utilizing sulfotransferases Reviewed

    Takamasa Teramoto, Rumi Adachi, Yoichi Sakakibara, Ming Cheh Liu, Masahito Suiko, Makoto Kimura, Yoshimitsu Kakuta

    FEBS Letters   583 ( 18 )   3091 - 3094   2009.9

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.febslet.2009.08.016

  • Snapshot of a Michaelis complex in a sulfuryl transfer reaction Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate Reviewed

    Takamasa Teramoto, Yoichi Sakakibara, Ming Cheh Liu, Masahito Suiko, Makoto Kimura, Yoshimitsu Kakuta

    Biochemical and Biophysical Research Communications   383 ( 1 )   83 - 87   2009.5

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.bbrc.2009.03.146

  • Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase-mSULT1D1 Reviewed

    Takamasa Teramoto, Yoichi Sakakibara, Ming Cheh Liu, Masahito Suiko, Makoto Kimura, Yoshimitsu Kakuta

    Biochemical and Biophysical Research Communications   379 ( 1 )   76 - 80   2009.1

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.bbrc.2008.12.013

  • Crystal structure of mSULT1D1, a mouse catecholamine sulfotransferase Reviewed

    Takamasa Teramoto, Yoichi Sakakibara, Kanako Inada, Katsuhisa Kurogi, Ming Cheh Liu, Masahito Suiko, Makoto Kimura, Yoshimitsu Kakuta

    FEBS Letters   582 ( 28 )   3909 - 3914   2008.11

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.febslet.2008.10.035

  • ERRγ tethers strongly bisphenol A and 4-α-cumylphenol in an induced-fit manner Reviewed

    Ayami Matsushima, Takamasa Teramoto, Hiroyuki Okada, Xiaohui Liu, Takatoshi Tokunaga, Yoshimitsu Kakuta, Yasuyuki Shimohigashi

    Biochemical and Biophysical Research Communications   373 ( 3 )   408 - 413   2008.8

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1016/j.bbrc.2008.06.050

  • Structural evidence for endocrine disruptor bisphenol A binding to human nuclear receptor ERRγ Reviewed

    Ayami Matsushima, Yoshimitsu Kakuta, Takamasa Teramoto, Takumi Koshiba, Xiaohui Liu, Hiroyuki Okada, Takatoshi Tokunaga, Shun Ichiro Kawabata, Makoto Kimura, Yasuyuki Shimohigashi

    Journal of biochemistry   142 ( 4 )   517 - 524   2007.10

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: 10.1093/jb/mvm158

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Presentations

  • 抗体による硫酸化チロシンとリン酸化チロシンの識別メカニズム

    ○森尚寛, 矢作浩太郎, 丸岡早紀, 亀谷陽平, 渡邉啓一, 吉澤一成, 塩田淑仁, 西本悦子, 寺本岳大, 角田佳充

    第46回蛋白質と酵素の構造と機能に関する九州シンポジウム  2024.9 

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    Event date: 2024.9

  • 植物がもつC-to-U 型RNA 編集機構の分子基盤

    ○漆原良太, 寺本岳大, 青山玲也, 岡田あゆみ, Bernard Gutmann, 一瀬瑞穂, 八木祐介, 中村崇裕, 角田佳充

    2024年度農芸化学会西日本支部大会  2024.9 

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    Event date: 2024.9

  • 抗硫酸化チロシン抗体のリガンド複合体の結晶構造解析

    ○森 尚寛, 矢作浩太郎, 西本悦子, 寺本岳大, 角田佳充

    2024年度農芸化学会西日本支部大会  2024.9 

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    Event date: 2024.9

  • シロイヌナズナ水酸化ジャスモン酸硫酸転移酵素の反応メカニズム解析

    ○大久保信宏,平田理桜,和泉健太,寺本岳大,角田佳充

    2024年度農芸化学会西日本支部大会  2024.9 

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    Event date: 2024.9

  • 効率的な小型抗体調製法の開発

    ○矢作浩太郎, 森 尚寛, 西本悦子, 寺本岳大, 角田佳充

    2024年度農芸化学会西日本支部大会  2024.9 

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    Event date: 2024.9

  • Pasteurella multocida ヒアルロン酸合成酵素の酵素反応分子メカニズムの解析

    ○前田憲人, 平島正人, 酒井航平, 寺本岳大, 角田佳充

    2024年度農芸化学会西日本支部大会  2024.9 

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    Event date: 2024.9

  • マダニ抗血液凝固蛋白質マダニンの活性化機構

    ○浅野陽来, 吉村美沙, 寺本岳大, 岩本祐香, 近藤真梨子, 西本悦子, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 蚊タンパク質チロシン硫酸転移酵素のX線結晶構造解析

    ○近藤真梨子, 吉村美沙, 寺本岳大, 西本悦子, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 植物グルコシノレート生合成に関わる硫酸転移酵素の基質複合体の立体構造解析

    ○森安亜美, 岩本祐香, 平田理桜, 渡邉観世, 森山凛太郎, 丸山明子, 寺本岳大, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 細菌スフィンゴ糖脂質合成酵素の結晶構造解析

    ○中島美月, 山田裕大, 大滝志郎, 寺本岳大, 沖野望, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 植物におけるRNA編集複合体エディトソーム構成タンパク質の立体構造解析と相互作用解析

    ○漆原良太, 丸野泰央, 寺本岳大, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 抗生物質生合成に関わる硫酸転移酵素の基質認識機構

    ○渡邉観世, 岩本祐香, 河野海斗, 鈴木凱登, 矢﨑雅菜, 有澤美枝子, 五十嵐雅之, 寺本岳大, 西本悦子, 角田佳充

    第61回化学関連支部合同九州大会  2024.6 

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    Event date: 2024.6

  • 多量体化によるタンパク質型リボヌクレアーゼP(RNase P)の機能獲得と分子進化

    @寺本岳大

    第48回生命の起原および進化学会学術講演会  2024.3 

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    Event date: 2024.5

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Venue:横浜市   Country:Japan  

  • Crystal structure of SgdX2 provides insight into the mechanism of sulfate transfer reaction International conference

    #Takahiro Mori, @Takamasa Teramoto, @Yoshimitsu Kakuta

    IUCR 2023  2023.8 

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    Event date: 2024.5

    Language:English  

    Venue:Melbourne   Country:Australia  

  • 最小エンザイム型RNase Pによる前駆体tRNAの認識様式と触媒機構の解明

    #児安剛志, @寺本岳大, @角田佳充

    第45回蛋白質と酵素の構造と機能に関する九州シンポジウム  2023.9 

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    Event date: 2024.5

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Venue:宮崎市   Country:Japan  

  • 好冷菌由来FamilyⅡ無機ピロホスファターゼの触媒反応機構解析

    #丸岡早紀, @寺本岳大, @角田佳充, 渡邉啓一

    第45回蛋白質と酵素の構造と機能に関する九州シンポジウム  2023.9 

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    Event date: 2024.5

    Language:Japanese  

    Venue:宮崎市   Country:Japan  

  • 高いRNA結合特異性を持つ2種類のL7Ae変異体-RNA複合体の結晶構造解析

    #中島もも香, @寺本岳大, 横林洋平, 福永圭佑, @角田佳充

    日本農芸化学会中四国・西日本支部2023年度合同大会  2023.9 

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    Event date: 2024.5

    Language:Japanese  

    Venue:高知市   Country:Japan  

  • 真菌糖脂質加水分解酵素EGCrP1の基質特異性解析

    #平田理桜, @石橋洋平, @寺本岳大, @沖野望, @角田佳充

    日本農芸化学会中四国・西日本支部2023年度合同大会  2023.9 

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    Event date: 2024.5

    Language:Japanese  

    Venue:高知市   Country:Japan  

  • 抗生物質生合成に関わる硫酸転移酵素の蛍光解析

    #河野 海斗, #岩本 祐香, @寺本 岳大, @角田 佳充, @西本 悦子

    第96回日本生化学会大会  2023.11 

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    Event date: 2024.5

    Language:Japanese  

    Venue:福岡市   Country:Japan  

  • 抗生物質の多様性を生み出す2種類の硫酸転移酵素の立体構造解析

    #岩本祐香, #鈴木凱登, #矢﨑雅菜, @有澤美枝子, @寺本岳大, @角田佳充

    第96回日本生化学会大会  2023.11 

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    Event date: 2024.5

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Venue:福岡市   Country:Japan  

    放線菌Streptomyces sp.は、結核菌に対して強い抗菌作用を有する抗生物質カプラザマイシンを合成する。合成されたカプラザマイシンには硫酸化修飾された分子が一定数存在し、構造多様性を生み出す要因になっている。この修飾は、2種類の硫酸転移酵素(Cpz4とCpz8)により行われる。これら2つの硫酸転移酵素による2段階の硫酸化メカニズムは、まずCpz8が一般的な硫酸基ドナー分子PAPS依存的に硫酸基ドナー分子スルフィシジンを合成し、次にCpz4がそのスルフィシジンを硫酸基ドナー基質としてカプラザマイシンを硫酸化するものである。つまり、スルフィシジンは細胞内で硫酸基のシャトル分子として働いている。これらの分子メカニズムの詳細は、酵素の立体構造情報がないため、不明な点が多い。本研究は、カプラザマイシン硫酸化修飾に不可欠なCpz8、Cpz4の酵素反応メカニズムの詳細を明らかにするために、立体構造解析を行った。
    Cpz8およびCpz4は、大腸菌組み換えタンパク質として発現し、精製した。立体構造決定は、X線結晶構造解析で行った。基質ドッキングモデル作成にはMOEを用いた。
    Cpz8-PAP-スルフィシジン前駆体複合体について、分解能1.59Åで立体構造を決定した。スルフィシジン前駆体の六員環部分はAsp67, Trp108, Tyr120と水素結合しており、脂肪鎖は多数の疎水性残基によるトンネル状のポケットに囲まれていた。さらに、Arg10が一般酸触媒、Asp67が一般塩基触媒として逐次反応様式で硫酸転移反応が行われると考えられた。
    Cpz4については、His308が硫酸化された反応中間体として、分解能2.11Åで立体構造を決定した。活性部位近傍には、小さな窪みを伴った広いポケットが存在し、基質ドッキングモデルで検討した結果、大きさの異なる2種類の基質(スルフィシジンとカプラザマイシン)をそれぞれ認識できると考えられた。さらに、His308が一時的に硫酸化される残基、His180とHis253は遷移状態を安定化する残基として働き、ピンポン反応様式で硫酸転移反応が行われると考えられた。
    以上、2段階硫酸化の詳細な分子メカニズムを初めて明らかにすることができた。これらの情報は、抗生物質カプラザマイシンの構造多様性を生み出すことにつながる可能性がある。一方、本研究は細胞内の真の硫酸基シャトル分子の認識様式を明らかにした初めての報告であり、広範囲のバクテリアで行われている硫酸化反応の理解に大きく貢献するものだと考えられる。

  • マダニ由来タンパク質チロシン硫酸転移酵素の結晶構造解析

    #吉村美沙, @寺本岳大, @西本悦子, @角田佳充

    第96回日本生化学会大会  2023.11 

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    Event date: 2024.5

    Language:Japanese  

    Venue:福岡市   Country:Japan  

  • 細菌のもつ最小タンパク質型リボヌクレアーゼPの構造解析

    @寺本岳大, #児安剛志, 横川隆志, 安達成彦, @真柳浩太, 千田俊哉, @角田佳充

    第96回日本生化学会大会  2023.11 

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    Event date: 2024.5

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Venue:福岡市   Country:Japan  

  • マンゴー由来ルイス型α1,3/α1,4-フコース転移酵素のI型糖鎖構造認識機序の解明

    岡田貴裕, @寺本岳大, 井原秀之, 池田義孝, @角田佳充

    第96回日本生化学会大会  2023.11 

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    Event date: 2024.5

    Language:Japanese  

    Country:Japan  

  • Structural Insights into Sulfated Tyrosine Recognition by an Engineered SH2 Domain

    #Mahoro Yamada, @Takamasa Teramoto, @Yoshimitsu Kakuta

    日本農芸化学会西日本支部第6回学生フォーラム  2023.11 

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    Event date: 2024.5

    Language:English   Presentation type:Symposium, workshop panel (public)  

    Venue:Online   Country:Japan  

  • Crystal Structure of the Human Sulfotransferase SULT1A2 in Complex with Pyridoxal

    #Sakamoto Sakura, Katsuhisa Kurogi, Yoichi Sakakibara, @Takamasa Teramoto, @Yoshimits Kakuta

    日本農芸化学会西日本支部第6回学生フォーラム  2023.11 

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    Event date: 2024.5

    Language:English   Presentation type:Symposium, workshop panel (public)  

    Venue:Online   Country:Japan  

  • 貝毒サキシトキシンの毒性を制御するシアノバクテリア硫酸転移酵素 SxtNのX線結晶構造解析

    #高木駿,@寺本岳大,@角田佳充

    日本農芸化学会西日本支部大会  2022.9 

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    Event date: 2023.9 - 2022.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:長崎大学   Country:Japan  

  • The crystal structure of Streptomyces sp. sulfotransferase StCpz8 involved in the biosynthesis of the antibiotic caprazamycin International conference

    #Yuka Iwamoto, #Kaito Suzuki, @Mieko Arisawa, @Takamasa Teramoto, @Yoshimitsu Kakuta

    IUCR 2023  2023.8 

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    Event date: 2023.8

    Language:English  

    Venue:Melbourne   Country:Australia  

  • 抗生物質の多様性を生み出す硫酸転移酵素の立体構造解析

    #岩本祐香, #鈴木凱登, @矢崎雅菜, @有澤美枝子, @寺本岳大, @角田佳充

    第60回化学関連支部合同九州大会  2023.7 

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    Event date: 2023.7

    Language:Japanese  

    Venue:北九州国際会議場   Country:Japan  

  • 植物グルコシノレート生合成に関わる硫酸転移酵素のX線結晶構造解析

    @斉藤成来, #岩本祐香, @丸山明子, @寺本岳大, @角田佳充

    化学関連支部合同九州大会  2023.7 

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    Event date: 2023.7

    Language:Japanese  

    Country:Japan  

  • 高いRNA結合特異性を持つL7Ae変異体-RNA複合体のX線結晶構造解析

    #中島もも香, @寺本岳大, @横林洋平, @福永圭佑, @角田佳充

    化学関連支部合同九州大会  2023.7 

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    Event date: 2023.7

    Language:Japanese  

    Venue:北九州国際会議場   Country:Japan  

  • シロイヌナズナ水酸化ジャスモン酸スルホトランスフェラーゼの X線結晶構造解析

    #和泉健太,@寺本岳大,@角田佳充

    日本生化学会九州支部  2023.6 

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    Event date: 2023.6

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:オンライン   Country:Japan  

  • グラム陰性細菌Sphingobium yanoikuyae グルクロノシルセラミド合成酵素のX線結晶構造解析

    #山田裕大,#大滝志郎,@寺本岳大,@沖野望,@角田佳充

    日本生化学会九州支部  2023.6 

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    Event date: 2023.6

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:オンライン   Country:Japan  

  • Crystallization of endoglycoceramidase-related protein 1 (EGCrP1)

    #Aya Kojima, #Rio Hirata, @Takamasa Teramoto, @Youhei Ishibashi, @Nozomu Okino, @Yoshimitsu Kakuta

    日本農芸化学会西日本支部学生フォーラム  2022.11 

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    Event date: 2022.11

    Language:English   Presentation type:Oral presentation (general)  

    Venue:オンライン   Country:Japan  

  • Structural analysis of endoglycoceramidase-related protein 2 (EGCrP2)

    #Nari Shimono, #Natsuki Onitsuka, @Takamasa Teramoto, @Youhei Ishibashi, @Nozomu Okino, @Yoshimitsu Kakuta

    日本農芸化学会西日本支部学生フォーラム  2022.11 

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    Event date: 2022.11

    Language:English   Presentation type:Oral presentation (general)  

    Venue:オンライン   Country:Japan  

  • Crystal structure of antibody that specifically recognizes polyethylene glycol International conference

    #Takahiro Mori, #Kenta Ishibashi, @Takamasa Teramoto, @Taro Shimizu, @Tatsuhiro Ishida, @Takeshi Mori, @Yoshimitsu Kakuta

    AsCA2022  2022.10 

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    Event date: 2022.10

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Ramada Plaza Hotel, Jeju island   Country:Korea, Republic of  

  • Crystal structure of designed pentatricopeptide repeat protein-RNA complex International conference

    #Aoyama Reiya, @Teramoto Takamasa, @Yagi Yusuke, @Nakamura Takahiro, @Kakuta Yoshimitsu

    AsCA2022  2022.10 

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    Event date: 2022.10

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Ramada Plaza Hotel, Jeju island   Country:Korea, Republic of  

  • The Crystal structure of tick tyrosylprotein sulfotransferase reveals the mechanism of madanin sulfation. International conference

    #Misa Yoshimura, @Takamasa Teramoto, @Etsuko Nishimoto, @Yoshimitsu Kakuta

    AsCA2022  2022.10 

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    Event date: 2022.10

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Ramada Plaza Hotel, Jeju island   Country:Korea, Republic of  

    For a tick to stably suck blood from a host, such as a human, inhibition of the host's hemostatic response is required. This inhibition is achieved by the madanin protein, which has two sulfated tyrosine residues. The sulfation modification of tyrosine residues at two sites is essential for the high inhibitory activity of madanin. and is catalyzed by tick tyrosylprotein sulfotransferase (tick TPST).
    In this study, the crystal structure of tick TPST complexed with madanin peptide was determined by X-ray crystallography at a resolution of 1.55 Å. The tick TPST formed a dimer, with the madanin peptide bound near the interface between the dimers. Based on the crystal structure, the order in which the tyrosine residues at the two sites underwent sulfation was considered. The results showed that there was no restriction on the order, but that sulfation at the first site strengthened the binding and facilitated sulfation at the second site. This suggests that ticks suck blood in a stable manner through efficient sulfation.

  • 人工PPRタンパク質の凝集性改善と標的RNA複合体の立体構造解析

    #青山玲也,@寺本岳大,八木祐介,@中村崇裕,@角田佳充

    日本農芸化学会西日本支部大会  2022.9 

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    Event date: 2022.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:長崎大学   Country:Japan  

  • 抗ポリエチレングリコール抗体の抗原認識機構の解析

    #森尚寛,#石橋賢汰,@寺本岳大,@清水太郎,@石田竜弘,@森健,@角田佳充

    日本農芸化学会西日本支部大会  2022.9 

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    Event date: 2022.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:長崎大学   Country:Japan  

  • 超好熱性アーキアPAPS合成酵素の立体構造解析

    #川上諄也,@寺本岳大,@角田佳充

    日本農芸化学会西日本支部大会  2022.9 

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    Event date: 2022.9

    Language:Japanese   Presentation type:Oral presentation (general)  

    Country:Japan  

  • エンザイム型リボヌクレアーゼPの構造解析 Invited

    @寺本岳大

    蛋白質と酵素の構造と機能に関する九州シンポジウム  2022.8 

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    Event date: 2022.8

    Language:Japanese   Presentation type:Oral presentation (general)  

    Venue:長崎市   Country:Japan  

  • 抗ポリエチレングリコール抗体の抗原認識機構の解析

    #森尚寛,#石橋賢汰,@寺本岳大,@清水太郎,@石田竜弘,@森健,@角田佳充

    化学関連支部合同九州大会  2022.7 

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    Event date: 2022.7

    Language:Japanese  

    Venue:北九州国際会議場   Country:Japan  

  • 吸血に必須なダニ由来タンパク質マダニンの硫酸化機構解明

    #吉村美沙,@寺本岳大,@西本悦子,@角田佳充

    化学関連支部合同九州大会  2022.7 

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    Event date: 2022.7

    Language:Japanese  

    Venue:北九州国際会議場   Country:Japan  

  • エンザイム型リボヌクレアーゼPの構造解析 Invited

    @寺本 岳大

    日本農芸化学会西日本支部例会  2022.1 

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    Event date: 2022.1

    Language:Japanese   Presentation type:Oral presentation (general)  

    Country:Japan  

  • 細菌の持つ最小タンパク質型RNase Pのクライオ電子顕微鏡解析

    #児安剛志, @寺本岳大, @安達成彦, @川崎政人, @守屋俊夫, @沼田倫征, @千田俊哉, @角田佳充

    日本農芸化学会西日本・中四国・関西支部 合同鹿児島大会  2022.9 

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    Event date: 2021.9

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Country:Japan  

  • tRNA 成熟化に関わるPRORP の基質認識機構の解明

    @寺本岳大, #児安剛志, @角田佳充, @Traci MT Hall

    化学関連支部合同九州大会  2021.7 

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    Event date: 2021.7

    Language:Japanese  

    Venue:オンライン   Country:Japan  

  • 抗生物質カプラザマイシン生合成に関わる硫酸転移酵素StCpz8 のX 線結晶構造解析

    #鈴木凱登, @寺本岳大, @角田佳充

    化学関連支部合同九州大会  2021.6 

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    Event date: 2021.7

    Language:Japanese  

    Country:Japan  

  • tRNA 成熟化に関わる単細胞藻Ostreococcus tauri PRORPのX 線結晶構造解析

    #児安剛志, @寺本岳大, @西本悦子, @角田佳充

    化学関連支部合同九州大会  2021.7 

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    Event date: 2021.7

    Language:Japanese  

    Country:Japan  

  • 超好熱性アーキアArchaeoglobus fulgidus APS KinaseのX線結晶構造解析

    #川上諄也、@寺本岳大、@角田佳充

    日本生化学会九州支部  2021.6 

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    Event date: 2021.6

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Country:Japan  

  • 単細胞藻由来エンザイム型RNase P(PRORP)のX線結晶構造解析

    @寺本岳大、#児安剛志、@西本悦子、@角田佳充

    日本農芸化学会西日本支部  2020.6 

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    Event date: 2020.11

    Language:Japanese   Presentation type:Symposium, workshop panel (public)  

    Venue:宮崎大学   Country:Japan  

  • 好熱性シアノバクテリア Dps の X 線結晶構㐀解析

    @寺本岳⼤,@湊拓⽣,@⾓⽥佳充,@⼩江誠司,@尹基⽯

    日本生化学会九州支部  2020.5 

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    Event date: 2020.5

    Language:Japanese  

    Country:Japan  

  • 細菌のもつ最小タンパク質型リボヌクレアーゼPの構造解析

    寺本 岳大, 児安 剛志, 横川 隆志, 安達 成彦, 真柳 浩太, 千田 俊哉, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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  • 抗生物質生合成に関わる硫酸転移酵素の蛍光解析

    河野 海斗, 岩本 祐香, 寺本 岳大, 角田 佳充, 西本 悦子

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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  • 抗生物質の多様性を生み出す2種類の硫酸転移酵素の立体構造解析

    岩本 祐香, 鈴木 凱登, 矢崎 雅菜, 有澤 美枝子, 寺本 岳大, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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  • マンゴー由来ルイス型α1,3/α1,4-フコース転移酵素のI型糖鎖構造認識機序の解明

    岡田 貴裕, 寺本 岳大, 井原 秀之, 池田 義孝, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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  • マダニ由来タンパク質チロシン硫酸転移酵素の結晶構造解析

    吉村 美沙, 寺本 岳大, 西本 悦子, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2023.10  (公社)日本生化学会

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  • ケモカイン受容体CCR5のヒト蛋白質チロシン硫酸転移酵素による翻訳後硫酸化修飾の構造基盤

    田中 槙之助, 寺本 岳大, 黒木 勝久, 榊原 陽一, 西本 悦子, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2024.11  (公社)日本生化学会

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  • X線と量子化学で解明する抗体の選択性 硫酸基とリン酸基の識別機構

    森 尚寛, 矢作 浩太郎, 丸岡 早紀, 亀谷 陽平, 渡邉 啓一, 吉澤 一成, 塩田 淑仁, 西本 悦子, 寺本 岳大, 角田 佳充

    日本生化学会大会プログラム・講演要旨集  2024.11  (公社)日本生化学会

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    Language:Japanese  

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MISC

Industrial property rights

Patent   Number of applications: 0   Number of registrations: 0
Utility model   Number of applications: 0   Number of registrations: 0
Design   Number of applications: 0   Number of registrations: 0
Trademark   Number of applications: 0   Number of registrations: 0

Professional Memberships

  • 生化学会

Research Projects

  • 脂質代謝に関わる非典型的なオルガネラ間相互作用と新規酵素に関する研究

    Grant number:24K08702  2024.4 - 2027.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    石橋 洋平, 寺本 岳大

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    Grant type:Scientific research funding

    ラビリンチュラ類はステロールやプロビタミンD3を合成し、高度不飽和脂肪酸であるDHAとのエステル体(ステロールエステル、SE)として高レベルで蓄積する、稀有な性質をもつ有用微生物である。本研究では進化的な起源が従来酵素とは全く異なる新しいSE合成酵素の構造と活性制御機構を解明することを目的とする。脂質代謝酵素の反応機構に関する新しい知見や、ラビリンチュラ類を用いた脂質生産の向上に寄与する新規因子の発見などに繋がることが期待される。また、予備実験で見出した、これまでの報告例とは似て非なるリポファジー様の現象についての詳細を明らかにし、未解明であったラビリンチュラ類の脂質分解機構の解明を目指す。

    CiNii Research

  • Studies on post-translational modification by tyrosine sulfation.

    Grant number:23K23529  2022.4 - 2026.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    榊原 陽一, 上地 珠代, 黒木 勝久, 橋口 拓勇, 寺本 岳大

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    Grant type:Scientific research funding

    翻訳後修飾としてのチロシン硫酸化は、分泌シグナル、タンパク質間相互作用、ウイルス宿主間相互作用の制御に関与する。チロシン硫酸化を担うTyrosylprotein Sulfotransferase (TPST) は、その細胞内局在性、組織特異性など発現の詳細に関する研究はほとんど行われていない。さらに基質となるタンパク質に関しても、いつ、どこで、何が、何のためにチロシン硫酸化されているかの情報はほとんど無い。そこで、チロシン硫酸化の空間および時間的制御機構を酵素と基質両面から理解する。さらに、チロシン硫酸化を標的としたプロテオーム解析技術やTPST特異的阻害剤開発にも取り組む。

    CiNii Research

  • 抗凝血・抗炎症ポリペプチドの硫酸化機構の解明

    Grant number:21K05384  2021.4 - 2024.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    角田 佳充, 寺本 岳大

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    Grant type:Scientific research funding

    ウイルスや病原体をヒトに仲介するマダニが、ヒトなどのホストから安定的に吸血するためには、ホストの止血反応と炎症反応の両方を阻害する必要がある。マダニは、これらの反応を阻害するタンパク質を持つ。このこの阻害活性には、特定のチロシン残基の硫酸化修飾が必須である。本研究は、マダニチロシン硫酸転移酵素の立体構造を決定し、詳細な分子メカニズムを原子レベル で解明することを目指す。

    CiNii Research

Class subject

  • 分析化学実験

    2024.10 - Present  

  • 応用生命化学実験

    2024.5 - Present   First semester

  • 生物機能分子化学Ⅰ

    2023.4 - Present   First semester

  • 生物物理化学I

    2023.4 - Present  

  • 生物機能分子化学II

    2022.4 - Present   First semester

  • 生物機能分子化学演習第一

    2022.4 - Present   Full year

  • 生物機能分子化学演習第二

    2022.4 - Present   Full year

  • 生物機能分子化学特別研究第一

    2022.4 - Present   Full year

  • 生物機能分子化学特別研究第二

    2022.4 - Present   Full year

  • 自然科学総合実験

    2024.10 - 2024.12   Fall quarter

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Teaching Student Awards

  • 日本生化学会大会 若手優秀発表賞

    Year and month of award:2024.11

    Classification of award-winning students:Postgraduate student   Name of award-winning student:漆原 良太

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  • 第45回蛋白質と酵素の構造と機能に関する九州シンポジウム 若手最優秀発表賞

    Year and month of award:2024.9

    Classification of award-winning students:Doctoral student   Name of award-winning student:森 尚寛

  • 農芸化学会2024年西日本支部大会 優秀発表賞

    Year and month of award:2024.9

    Classification of award-winning students:Doctoral student   Name of award-winning student:森 尚寛

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  • 農芸化学会2024年西日本支部大会 優秀発表賞

    Year and month of award:2024.9

    Classification of award-winning students:Postgraduate student   Name of award-winning student:漆原 良太

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  • 第61回化学関連支部合同九州大会 優秀発表賞

    Year and month of award:2024.7

    Classification of award-winning students:Postgraduate student   Name of award-winning student:浅野 陽来

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  • 日本生化学会九州支部例会 優秀ポスター賞銅賞

    Year and month of award:2024.6

    Classification of award-winning students:Doctoral student   Name of award-winning student:森 尚寛

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