Kyushu University Academic Staff Educational and Research Activities Database
Researcher information (To researchers) Need Help? How to update
Atsuta Yuji Last modified date:2024.06.03

Graduate School
Undergraduate School

E-Mail *Since the e-mail address is not displayed in Internet Explorer, please use another web browser:Google Chrome, safari.
 Reseacher Profiling Tool Kyushu University Pure
Academic Degree
PhD in Developmental Biology
Country of degree conferring institution (Overseas)
Field of Specialization
Developmental biology, Cell biology
ORCID(Open Researcher and Contributor ID)
Total Priod of education and research career in the foreign country
Research Interests
  • Study for vertebrate limb development
    -Cellular reprogramming of limb progenitors
    -Making limb bud-like organoids
    -Bioelectric signals in limb development
    -Dissecting mechanisms underlying drug teratogenicity by using limb buds

    Genetic and epigenetic mechanisms underlying diversity of sternum shapes between species
    keyword : Limb development/regeneration, Direct reprogramming, Organoid, Membrane potential, Sternum development, Keel
Academic Activities
1. Yuji Atsuta*, ChangHee Lee*, Alan R. Rodrigues*, Charlotte Colle, Reiko R. Tomizawa, Ernesto G. Lujan, Patrick Tschopp, Laura Galan, Meng Zhu, Joshua M. Gorham, Jean-Pierre Vannier, Christine E. Seidman, Jonathan G. Seidman, Marian A. Ros, Olivier Pourquié, Clifford J. Tabin , Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors, Developmental Cell, 10.1016/j.devcel.2023.12.010, 59, 415-430, 2024.02.
2. Katsuya Suzuki*,Seung June Kwon*, Daisuke Saito, Yuji Atsuta(Corresponding), LIN28 is essential for the maintenance of chicken primordial germ cells, Cells & Development, 10.1016/j.cdev.2023.203874, 176, 203874, 2023.07.
3. Atsuta, Yuji; Tomizawa, Reiko R.; Levin, Michael; Tabin, Clifford J., L-type voltage-gated Ca2+ channel Ca(V)1.2 regulates chondrogenesis during limb development, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 10.1073/pnas.1908981116, 116, 43, 21592-21601, 2019.10, All cells, including nonexcitable cells, maintain a discrete transmembrane potential (V mem), and have the capacity to modulate V mem and respond to their own and neighbors' changes in V mem Spatiotemporal variations have been described in developing embryonic tissues and in some cases have been implicated in influencing developmental processes. Yet, how such changes in V mem are converted into intracellular inputs that in turn regulate developmental gene expression and coordinate patterned tissue formation, has remained elusive. Here we document that the V mem of limb mesenchyme switches from a hyperpolarized to depolarized state during early chondrocyte differentiation. This change in V mem increases intracellular Ca2+ signaling through Ca2+ influx, via CaV1.2, 1 of L-type voltage-gated Ca2+ channels (VGCCs). We find that CaV1.2 activity is essential for chondrogenesis in the developing limbs. Pharmacological inhibition by an L-type VGCC specific blocker, or limb-specific deletion of CaV1.2, down-regulates expression of genes essential for chondrocyte differentiation, including Sox9, Col2a1, and Agc1, and thus disturbs proper cartilage formation. The Ca2+-dependent transcription factor NFATc1, which is a known major transducer of intracellular Ca2+ signaling, partly rescues Sox9 expression. These data reveal instructive roles of CaV1.2 in limb development, and more generally expand our understanding of how modulation of membrane potential is used as a mechanism of developmental regulation..
4. Atsuta, Yuji; Takahashi, Yoshiko, Early formation of the Mullerian duct is regulated by sequential actions of BMP/Pax2 and FGF/Lim1 signaling, DEVELOPMENT, 10.1242/dev.137067, 143, 19, 3549-3559, 2016.10, The Müllerian duct (MD) and Wolffian duct (WD) are embryonic tubular tissues giving rise to female and male reproductive tracts, respectively. In amniote embryos, both MD and WD emerge in both sexes, but subsequently degenerate in the males and females, respectively. Here, by using MD-specific gene manipulations in chicken embryos, we identify the molecular and cellular mechanisms that link early MD specification to tubular invagination. Early (pre-)specification of MD precursors in the coelomic epithelium requires BMP signaling and its downstream target Pax2 in a WD-independent process. Subsequently, the BMP/Pax2 axis induces Lim1 expression, a hallmark of MD specification, for which FGF/ERK and WD-derived signals are also required. Finally, the sequential actions of the BMP/Pax2 and FGF/Lim1 axes culminate in epithelial invagination to form a tubular structure driven by an apical constriction, where apical accumulation of phospho-myosin light chain is positively regulated by FGF/ERK signaling. Our study delineates mechanisms governing the early formation of the MD, and also serves as a model of how an epithelial cell sheet is transformed to a tubular structure, a process seen in a variety of developmental contexts..
5. Atsuta, Yuji; Takahashi, Yoshiko, FGF8 coordinates tissue elongation and cell epithelialization during early kidney tubulogenesis, DEVELOPMENT, 10.1242/dev.122408, 142, 13, 2329, 2015.07, When a tubular structure forms during early embryogenesis, tubular elongation and lumen formation (epithelialization) proceed simultaneously in a spatiotemporally coordinated manner. We here demonstrate, using the Wolffian duct (WD) of early chicken embryos, that this coordination is regulated by the expression of FGF8, which shifts posteriorly during body axis elongation. FGF8 acts as a chemoattractant on the leader cells of the elongating WD and prevents them from epithelialization, whereas static ('rear') cells that receive progressively less FGF8 undergo epithelialization to form a lumen. Thus, FGF8 acts as a binary switch that distinguishes tubular elongation from lumen formation. The posteriorly shifting FGF8 is also known to regulate somite segmentation, suggesting that multiple types of tissue morphogenesis are coordinately regulated by macroscopic changes in body growth..
6. Atsuta, Yuji; Tadokoro, Ryosuke; Saito, Daisuke; Takahashi, Yoshiko, Transgenesis of the Wolffian duct visualizes dynamic behavior of cells undergoing tubulogenesis in vivo, DEVELOPMENT GROWTH & DIFFERENTIATION, 10.1111/dgd.12047, 55, 4, 579-590, 2013.05, Deciphering how the tubulogenesis is regulated is an essential but unsolved issue in developmental biology. Here, using Wolffian duct (WD) formation in chicken embryos, we have developed a novel method that enables gene manipulation during tubulogenesis in vivo. Exploiting that WD arises from a defined site located anteriorly in the embryo (pronephric region), we targeted this region with the enhanced green fluorescent protein (EGFP) gene by the in ovo electroporation technique. EGFP-positive signals were detected in a wide area of elongating WD, where transgenic cells formed an epithelial component in a mosaic manner. Time-lapse live imaging analyses further revealed dynamic behavior of cells during WD elongation: some cells possessed numerous filopodia, and others exhibited cellular tails that repeated elongation and retraction. The retraction of the tail was precisely regulated by Rho activity via actin dynamics. When electroporated with the C3 gene, encoding Rho inhibitor, WD cells failed to contract their tails, resulting in an aberrantly elongated process. We further combined with the Tol2 transposon-mediated gene transfer technique, and could trace EGFP-positive cells at later stages in the ureteric bud sprouting from WD. This is the first demonstration that exogenous gene(s) can directly be introduced into elongating tubular structures in living amniote embryos. This method has opened a way to investigate how a complex tubulogenesis proceeds in higher vertebrates..
7. Daniel Aldea*, Yuji Atsuta*, Blerina Kokalari, Stephen F. Schaffner, Rexxi D. Prasasya, Adam Aharoni, Heather L. Dingwall, Bailey Warder, Yana G. Kamberov (*equal contribution), Repeated mutation of a developmental enhancer contributed to human thermoregulatory evolution, Proceedings of the National Academy of Sciences of the United States of America, 10.1073/pnas.2021722118, 118, 16, e2021722118, 2021; Vol. 118 (No. 16): e2021722118, 2021.04, Humans sweat to cool their bodies and have by far the highest eccrine sweat gland density among primates. Humans’ high eccrine gland density has long been recognized as a hallmark human evolutionary adaptation, but its genetic basis has been unknown. In humans, expression of the Engrailed 1 (EN1) transcription factor correlates with the onset of eccrine gland formation. In mice, regulation of ectodermal En1 expression is a major determinant of natural variation in eccrine gland density between strains, and increased En1 expression promotes the specification ofmore eccrine glands. Here, we show that regulation of EN1 has evolved specifically on the human lineage to promote eccrine gland formation. Using comparative genomics and validation of ectodermal enhancer activity in mice, we identified a human EN1 skin enhancer, hECE18. We showed that multiple epistatically interacting derived substitutions in the human ECE18 enhancer increased its activity compared with nonhuman ape orthologs in cultured keratinocytes. Repression of hECE18 in human cultured keratinocytes specifically attenuated EN1 expression, indicating this element positively regulates EN1 in this context. In a humanized enhancer knock-in mouse, hECE18 increased developmental En1 expression in the skin to induce the formation of more eccrine glands. Our study uncovers a genetic basis contributing to the evolution of one of the most singular human adaptations and implicates multiple interacting mutations in a single enhancer as a mechanism for human evolutionary change..
8. Reiko R. Tomizawa, Clifford J. Tabin, Yuji Atsuta (corresponding author), In ovo electroporation of chicken limb bud ectoderm, Developmental Dynamics, in press, 2021.05.
1. Yuji Atsuta, Direct reprogramming of non-limb fibroblasts to cells with properties of limb progenitors, 第55回日本発生生物学会年会, 2022.06, The limb bud progenitors (LPs), which originate from the somatopleural layer of the lateral plate mesoderm, give rise to the majority of tissues within the mature patterned limb including bones, cartilage and tendons. The lateral plate mesoderm also gives rise to the mesodermal components of the trunk, flank and neck. However, the mesenchymal cells generated at these other axial levels cannot produce the variety of cell types found in the limb, nor can they be directed to form a patterned appendage-like structure, even when placed in the context of the signals responsible for organizing the limb bud. To identify factors involved in establishing limb progenitor properties in lateral plate mesoderm, we took a reprogramming approach, reasoning that the full set of the factors specifying “limbness” might be sufficient to convert non-limb fibroblasts into LP-like cells. As a result, we find that a set of factors (Prdm16, Zbtb16 and Lin28a) is capable of imparting LP-like properties to non-limb fibroblasts. Cells reprogrammed by these factors show similar gene expression profiles, and can differentiate into similar cell types, as endogenous LPs. The further addition of Lin41 potentiates proliferation of the reprogrammed cells while suppressing differentiation. These results suggest that these same four key factors may play pivotal roles in the specification of legitimate LPs..
2. Yuji Atsuta, Making vertebrate limbs from non-limb fibroblasts, SDB 79th Meeting, 2020.07.
Membership in Academic Society
  • Society for Developmental Biology
  • Japanese Society of Developmental Biologists