2024/11/13 更新

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写真a

ユミモト カナエ
弓本 佳苗
YUMIMOTO KANAE
所属
理学研究院 化学部門 准教授
理学部 生物学科(併任)
職名
准教授
連絡先
メールアドレス
電話番号
0928024160
ホームページ

研究分野

  • ライフサイエンス / 腫瘍生物学

学位

  • 博士(医学)

受賞

  • 第32回 井上研究奨励賞

    2016年2月  

論文

  • CRL2<SUP>KLHDC3</SUP> and CRL1<SUP>Fbxw7</SUP> cooperatively mediate c-Myc degradation 国際誌

    Motomura, S; Yumimoto, K; Tomonaga, T; Nakayama, KI

    ONCOGENE   43 ( 25 )   1917 - 1929   2024年6月   ISSN:0950-9232 eISSN:1476-5594

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Oncogene  

    c-Myc is a proto-oncoprotein that regulates various cellular processes and whose abnormal expression leads to tumorigenesis. c-Myc protein stability has been shown to be predominantly controlled by the ubiquitin ligase (E3) CRL1Fbxw7 in a manner dependent on glycogen synthase kinase 3 (GSK3)–mediated phosphorylation. Here we show that, in some types of cancer cells, c-Myc degradation is largely insensitive to the GSK3 inhibitor (GSK3i) CHIR99021, suggesting the existence of an E3 other than CRL1Fbxw7 for c-Myc degradation. Mass spectrometry identified CRL2KLHDC3 as such an E3. In GSK3i-insensitive cancer cells, combined depletion of Fbxw7 and KLHDC3 resulted in marked stabilization of c-Myc, suggestive of a cooperative action of Fbxw7 and KLHDC3. Furthermore, transplantation of such cells deficient in both Fbxw7 and KLHDC3 into immunodeficient mice gave rise to larger tumors compared with those formed by cells lacking only Fbxw7. GSK3i-insensitive pancreatic cancer cells expressed lower levels of SHISA2, a negative regulator of the Wnt signaling pathway, than did GSK3i-sensitive cells. KLHDC3 mRNA abundance was associated with prognosis in pancreatic cancer patients with a low level of SHISA2 gene expression. These results suggest that KLHDC3 cooperates with Fbxw7 to promote c-Myc degradation in a subset of cancer cells with low GSK3 activity.

    DOI: 10.1038/s41388-024-03048-7

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  • Identification of effective CCR2 inhibitors for cancer therapy using humanized mice(タイトル和訳中)

    Sugiyama Shigeaki, Yumimoto Kanae, Fujinuma Shun, Nakayama Keiichi I.

    The Journal of Biochemistry   175 ( 2 )   195 - 204   2024年2月   ISSN:0021-924X

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    記述言語:英語   出版者・発行元:(公社)日本生化学会  

  • A stepwise and digital pattern of RSK phosphorylation determines the outcome of thymic selection 査読

    Shintaro Funasaki, Atsushi Hatano, Hirokazu Nakatsumi, Daisuke Koga, Osamu Sugahara, Kanae Yumimoto, Masaya Baba, Masaki Matsumoto, Keiichi I. Nakayama

    iScience   26 ( 9 )   107552 - 107552   2023年9月

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    記述言語:その他   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1016/j.isci.2023.107552

  • Molecular evolution of Keap1 was essential for adaptation of vertebrates to terrestrial life. 査読 国際誌

    Kanae Yumimoto, Shigeaki Sugiyama, Saori Motomura, Daisuke Takahashi, Keiichi I Nakayama

    Science advances   9 ( 20 )   eadg2379   2023年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Reactive oxygen species (ROS) posed a risk for the transition of vertebrates from aquatic to terrestrial life. How ancestral organisms adapted to such ROS exposure has remained a mystery. Here, we show that attenuation of the activity of the ubiquitin ligase CRL3Keap1 for the transcription factor Nrf2 during evolution was key to development of an efficient response to ROS exposure. The Keap1 gene was duplicated in fish to give rise to Keap1A and the only remaining mammalian paralog Keap1B, the latter of which shows a lower affinity for Cul3 and contributes to robust Nrf2 induction in response to ROS exposure. Mutation of mammalian Keap1 to resemble zebrafish Keap1A resulted in an attenuated Nrf2 response, and most knock-in mice expressing such a Keap1 mutant died on exposure as neonates to sunlight-level ultraviolet radiation. Our results suggest that molecular evolution of Keap1 was essential for adaptation to terrestrial life.

    DOI: 10.1126/sciadv.adg2379

  • F-Box Proteins and Cancer. 査読 国際誌

    Kanae Yumimoto, Yuhei Yamauchi, Keiichi I Nakayama

    Cancers   12 ( 5 )   2020年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    Controlled protein degradation is essential for the operation of a variety of cellular processes including cell division, growth, and differentiation. Identification of the relations between ubiquitin ligases and their substrates is key to understanding the molecular basis of cancer development and to the discovery of novel targets for cancer therapeutics. F-box proteins function as the substrate recognition subunits of S-phase kinase-associated protein 1 (SKP1)-Cullin1 (CUL1)-F-box protein (SCF) ubiquitin ligase complexes. Here, we summarize the roles of specific F-box proteins that have been shown to function as tumor promoters or suppressors. We also highlight proto-oncoproteins that are targeted for ubiquitylation by multiple F-box proteins, and discuss how these F-box proteins are deployed to regulate their cognate substrates in various situations.

    DOI: 10.3390/cancers12051249

  • Recent insight into the role of FBXW7 as a tumor suppressor. 査読 国際誌

    Kanae Yumimoto, Keiichi I Nakayama

    Seminars in cancer biology   2020年2月

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    記述言語:英語  

    FBXW7 (also known as Fbw7, Sel10, hCDC4, or hAgo) is a tumor suppressor and the most frequently mutated member of the F-box protein family in human cancers. FBXW7 functions as the substrate recognition component of an SCF-type E3 ubiquitin ligase. It specifically controls the proteasome-mediated degradation of many oncoproteins such as c-MYC, NOTCH, KLF5, cyclin E, c-JUN, and MCL1. In this review, we summarize the molecular and biological features of FBXW7 and its substrates as well as the impact of mutations of FBXW7 on cancer development. We also address the clinical potential of anticancer therapy targeting FBXW7.

    DOI: 10.1016/j.semcancer.2020.02.017

  • Potentials of C-C motif chemokine 2-C-C chemokine receptor type 2 blockers including propagermanium as anticancer agents. 査読 国際誌

    Kanae Yumimoto, Shigeaki Sugiyama, Koshi Mimori, Keiichi I Nakayama

    Cancer science   110 ( 7 )   2090 - 2099   2019年7月

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    記述言語:英語  

    Inflammation plays an essential role in the development and progression of most cancers. Chemokine C-C motif chemokine 2 (CCL2) and its receptor C-C chemokine receptor type 2 (CCR2) constitute a key signaling axis in inflammation that has recently attracted much interest on the basis of evidence showing its association with cancer progression. Propagermanium (3-oxygermylpropionic acid polymer) is an organogermanium compound that is given for the treatment of hepatitis B in Japan and which inhibits the CCL2-CCR2 signaling pathway. Herein, we review the importance of the CCL2-CCR2 axis as a target in cancer treatment as shown by studies in mice and humans with pharmacological agents including propagermanium.

    DOI: 10.1111/cas.14075

  • SCFFbxw7 ubiquitylates KLF7 for degradation in a manner dependent on GSK-3-mediated phosphorylation. 査読 国際誌

    Shigeaki Sugiyama, Kanae Yumimoto, Ippei Inoue, Keiichi I Nakayama

    Genes to cells : devoted to molecular & cellular mechanisms   24 ( 5 )   354 - 365   2019年5月

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    記述言語:英語  

    The biological relation between ubiquitin ligases and their substrates has been largely unclear. We previously developed a method-differential proteomics-based identification of ubiquitylation substrates (DiPIUS)-for the comprehensive identification of substrates for a given ubiquitin ligase. We have now applied DiPIUS to the F-box protein Fbxw7 in three cell lines (mHepa, Neuro2A and C2C12) and thereby identified Krüppel-like factor 7 (KLF7) as a candidate substrate of the SCFFbxw7 ubiquitin ligase complex. KLF7 was shown to interact with Fbxw7 and to undergo Fbxw7-mediated polyubiquitylation. The stability of KLF7 was increased by depletion of Fbxw7, mutation of a putative Cdc4 phosphodegron (CPD) of KLF7 or exposure to inhibitors of glycogen synthase kinase-3 (GSK-3). Over-expression of Fbxw7 in Neuro2A cells down-regulated expression of the p21Cip1 gene, which is a transcriptional target of KLF7 in neuronal differentiation and maintenance. Despite the presence of an almost identical CPD sequence in KLF6, the closest paralog of KLF7, mutation of this sequence affected neither the interaction of KLF6 with Fbxw7 nor its half-life. Our results suggest that KLF7, but not KLF6, is a bona fide substrate of SCFFbxw7 , and that control of KLF7 abundance by SCFFbxw7 might contribute to the regulation of neuronal differentiation and maintenance.

    DOI: 10.1111/gtc.12680

  • Degradation of the endoplasmic reticulum-anchored transcription factor MyRF by the ubiquitin ligase SCFFbxw7 in a manner dependent on the kinase GSK-3. 査読 国際誌

    Shogo Nakayama, Kanae Yumimoto, Atsuki Kawamura, Keiichi I Nakayama

    The Journal of biological chemistry   293 ( 15 )   5705 - 5714   2018年4月

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    記述言語:英語  

    The ubiquitin-proteasome system regulates the abundance of many cellular proteins by mediating their targeted degradation. We previously developed a method-differential proteomics-based identification of ubiquitylation substrates (DiPIUS)-for the comprehensive identification of substrates for a given F-box protein subunit of SCF-type ubiquitin ligases. We have now applied DiPIUS to the F-box protein Fbxw7 in three cell lines (mHepa, Neuro2A, and C2C12) and thereby identified myelin regulatory factor (MyRF), an endoplasmic reticulum-anchored transcription factor that is essential for myelination of nerves in the central nervous system, as a candidate substrate of Fbxw7 specifically in mHepa cells. Co-immunoprecipitation analysis confirmed that the NH2-terminal cytoplasmic domain of MyRF interacted with Fbxw7 in these cells. Furthermore, an in vitro ubiquitylation assay revealed that MyRF undergoes polyubiquitylation in the presence of purified recombinant SCFFbxw7 In addition, the stability of MyRF in mHepa cells was increased by mutation of a putative phosphodegron sequence or by exposure of the cells to an inhibitor of glycogen synthase kinase-3 (GSK-3). We found that MyRF mRNA is not restricted to the central nervous system but is instead distributed widely among mouse tissues. Furthermore, with the use of RNA sequencing in mHepa cells overexpressing or depleted of MyRF, we identified many novel potential target genes of MyRF. Our results thus suggest that Fbxw7 controls the transcription of MyRF target genes in various tissues through regulation of MyRF protein stability in a manner dependent on MyRF phosphorylation by GSK-3.

    DOI: 10.1074/jbc.RA117.000741

  • FBXL12-Mediated Degradation of ALDH3 is Essential for Trophoblast Differentiation During Placental Development. 査読 国際誌

    Masaaki Nishiyama, Akihiro Nita, Kanae Yumimoto, Keiichi I Nakayama

    Stem cells (Dayton, Ohio)   33 ( 11 )   3327 - 40   2015年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    How stem cells maintain their stemness or initiate exit from the stem cell state for differentiation remains largely unknown. Aldehyde dehydrogenase (ALDH) activity is a hallmark of stem cells-including embryonic, adult tissue, and cancer stem cells-and is essential for their maintenance. The mechanisms by which ALDH activity is regulated in stem cells have remained poorly understood, however. We now show that the ubiquitin-dependent degradation of ALDH3 mediated by FBXL12 (F box and leucine-rich repeat protein 12) is essential for execution of the differentiation program of trophoblast stem cells (TSCs). FBXL12 is present only in eutherian mammals, and its expression is largely restricted to the placenta during mouse embryogenesis. FBXL12 was found to interact specifically with members of the ALDH3 family and to mediate their polyubiquitylation. Most mice deficient in FBXL12 died during the embryonic or perinatal period probably as a result of abnormal development of the placenta, characterized by impaired formation of the junctional zone. ALDH3 accumulated in the FBXL12-deficient placenta, and forced expression of ALDH3 in wild-type TSCs phenocopied the differentiation defect of FBXL12-deficient TSCs. Conversely, inhibition of ALDH3 activity by gossypol rescued the phenotype of FBXL12 deficiency. Our results suggest that FBXL12 plays a key role in the downregulation of ALDH3 activity in TSCs and thereby initiates trophoblast differentiation during placental development.

    DOI: 10.1002/stem.2088

  • FBXO21 mediates the ubiquitylation and proteasomal degradation of EID1. 査読 国際誌

    Koki Watanabe, Kanae Yumimoto, Keiichi I Nakayama

    Genes to cells : devoted to molecular & cellular mechanisms   20 ( 8 )   667 - 74   2015年8月

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    記述言語:英語  

    Although identification of substrates for ubiquitin ligase (E3) is important for understanding its biological functions, detection of the interaction between an E3 and its substrates has remained challenging. We recently developed a new approach, termed differential proteomics-based identification of ubiquitylation substrates (DiPIUS), for the discovery of substrates of a given E3 ligase. We have now applied this approach to an uncharacterized human F-box protein, FBXO21, which serves as the substrate-recognition subunit of a SKP1-CUL1-F-box protein (SCF)-type E3, thereby identifying EID1 (EP300-interacting inhibitor of differentiation 1) as a candidate substrate. The central and COOH-terminal portion of FBXO21 was found to interact with the COOH-terminal region of EID1 in transfected cells. Over-expression of FBXO21 resulted in the down-regulation of EID1, whereas disruption of the FBXO21 gene with the CRISPR/Cas9 system stabilized EID1 and led to its accumulation in both the cytoplasm and nucleus. An in vitro ubiquitylation assay showed that EID1 is a direct substrate of SCF(FBXO)(21). Collectively, our results suggest that EID1 is a bona fide substrate of FBXO21 and that the control of EID1 abundance by SCF(FBXO)(21) might affect the transcriptional repression activity of EID1.

    DOI: 10.1111/gtc.12260

  • Fbxw7 suppresses cancer metastasis by inhibiting niche formation. 査読 国際誌

    Kanae Yumimoto, Keiichi I Nakayama

    Oncoimmunology   4 ( 8 )   e1022308   2015年8月

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    記述言語:英語  

    Fbxw7 has been identified as an oncosuppressor protein in many types of cancer. We have recently shown that loss of Fbxw7 in bone marrow-derived stromal cells (BMSCs) promotes cancer metastasis by increasing production of the chemokine CCL2, which attracts monocytic myeloid-derived suppressor cells (Mo-MDSCs) and macrophages to the metastatic niche.

    DOI: 10.1080/2162402X.2015.1022308

  • Regulation of GATA-binding protein 2 levels via ubiquitin-dependent degradation by Fbw7: involvement of cyclin B-cyclin-dependent kinase 1-mediated phosphorylation of THR176 in GATA-binding protein 2. 査読 国際誌

    Tomomi Nakajima, Kyoko Kitagawa, Tatsuya Ohhata, Satoshi Sakai, Chiharu Uchida, Kiyoshi Shibata, Naoko Minegishi, Kanae Yumimoto, Keiichi I Nakayama, Kazuma Masumoto, Fuminori Katou, Hiroyuki Niida, Masatoshi Kitagawa

    The Journal of biological chemistry   290 ( 16 )   10368 - 81   2015年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    A GATA family transcription factor, GATA-binding protein 2 (GATA2), participates in cell growth and differentiation of various cells, such as hematopoietic stem cells. Although its expression level is controlled by transcriptional induction and proteolytic degradation, the responsible E3 ligase has not been identified. Here, we demonstrate that F-box/WD repeat-containing protein 7 (Fbw7/Fbxw7), a component of Skp1, Cullin 1, F-box-containing complex (SCF)-type E3 ligase, is an E3 ligase for GATA2. GATA2 contains a cell division control protein 4 (Cdc4) phosphodegron (CPD), a consensus motif for ubiquitylation by Fbw7, which includes Thr(176). Ectopic expression of Fbw7 destabilized GATA2 and promoted its proteasomal degradation. Substitution of threonine 176 to alanine in GATA2 inhibited binding with Fbw7, and the ubiquitylation and degradation of GATA2 by Fbw7 was suppressed. The CPD kinase, which mediates the phosphorylation of Thr(176), was cyclin B-cyclin-dependent kinase 1 (CDK1). Moreover, depletion of endogenous Fbw7 stabilized endogenous GATA2 in K562 cells. Conditional Fbw7 depletion in mice increased GATA2 levels in hematopoietic stem cells and myeloid progenitors at the early stage. Increased GATA2 levels in Fbw7-conditional knock-out mice were correlated with a decrease in a c-Kit high expressing population of myeloid progenitor cells. Our results suggest that Fbw7 is a bona fide E3 ubiquitin ligase for GATA2 in vivo.

    DOI: 10.1074/jbc.M114.613018

  • F-box protein FBXW7 inhibits cancer metastasis in a non-cell-autonomous manner. 査読 国際誌

    Kanae Yumimoto, Sayuri Akiyoshi, Hiroki Ueo, Yasuaki Sagara, Ichiro Onoyama, Hiroaki Ueo, Shinji Ohno, Masaki Mori, Koshi Mimori, Keiichi I Nakayama

    The Journal of clinical investigation   125 ( 2 )   621 - 35   2015年2月

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    記述言語:英語  

    The gene encoding F-box protein FBXW7 is frequently mutated in many human cancers. Although most previous studies have focused on the tumor-suppressive capacity of FBXW7 in tumor cells themselves, we determined that FBXW7 in the host microenvironment also suppresses cancer metastasis. Deletion of Fbxw7 in murine BM-derived stromal cells induced accumulation of NOTCH and consequent transcriptional activation of Ccl2. FBXW7-deficient mice exhibited increased serum levels of the chemokine CCL2, which resulted in the recruitment of both monocytic myeloid-derived suppressor cells and macrophages, thereby promoting metastatic tumor growth. Administration of a CCL2 receptor antagonist blocked the enhancement of metastasis in FBXW7-deficient mice. Furthermore, in human breast cancer patients, FBXW7 expression in peripheral blood was associated with serum CCL2 concentration and disease prognosis. Together, these results suggest that FBXW7 antagonizes cancer development in not only a cell-autonomous manner, but also a non-cell-autonomous manner, and that modulation of the FBXW7/NOTCH/CCL2 axis may provide a potential approach to suppression of cancer metastasis.

    DOI: 10.1172/JCI78782

  • MDM2 mediates nonproteolytic polyubiquitylation of the DEAD-Box RNA helicase DDX24. 査読 国際誌

    Takayoshi Yamauchi, Masaaki Nishiyama, Toshiro Moroishi, Kanae Yumimoto, Keiichi I Nakayama

    Molecular and cellular biology   34 ( 17 )   3321 - 40   2014年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    MDM2 mediates the ubiquitylation and thereby triggers the proteasomal degradation of the tumor suppressor protein p53. However, genetic evidence suggests that MDM2 contributes to multiple regulatory networks independently of p53 degradation. We have now identified the DEAD-box RNA helicase DDX24 as a nucleolar protein that interacts with MDM2. DDX24 was found to bind to the central region of MDM2, resulting in the polyubiquitylation of DDX24 both in vitro and in vivo. Unexpectedly, however, the polyubiquitylation of DDX24 did not elicit its proteasomal degradation but rather promoted its association with preribosomal ribonucleoprotein (pre-rRNP) processing complexes that are required for the early steps of pre-rRNA processing. Consistently with these findings, depletion of DDX24 in cells impaired pre-rRNA processing and resulted both in abrogation of MDM2 function and in consequent p53 stabilization. Our results thus suggest an unexpected role of MDM2 in the nonproteolytic ubiquitylation of DDX24, which may contribute to the regulation of pre-rRNA processing.

    DOI: 10.1128/MCB.00320-14

  • Substrate binding promotes formation of the Skp1-Cul1-Fbxl3 (SCF(Fbxl3)) protein complex. 査読 国際誌

    Kanae Yumimoto, Tetsuya Muneoka, Tomohiro Tsuboi, Keiichi I Nakayama

    The Journal of biological chemistry   288 ( 45 )   32766 - 76   2013年11月

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    記述言語:英語  

    The Skp1-Cul1-F-box protein (SCF) complex is one of the most well characterized types of ubiquitin ligase (E3), with the E3 activity of the complex being regulated in part at the level of complex formation. Fbxl3 is an F-box protein that is responsible for the ubiquitylation and consequent degradation of cryptochromes (Crys) and thus regulates oscillation of the circadian clock. Here we show that formation of the SCF(Fbxl3) complex is regulated by substrate binding in vivo. Fbxl3 did not associate with Skp1 and Cul1 to a substantial extent in transfected mammalian cells. Unexpectedly, however, formation of the SCF(Fbxl3) complex was markedly promoted by forced expression of its substrate Cry1 in these cells. A mutant form of Fbxl3 that does not bind to Cry1 was unable to form an SCF complex, suggesting that interaction of Cry1 with Fbxl3 is essential for formation of SCF(Fbxl3). In contrast, recombinant Fbxl3 associated with recombinant Skp1 and Cul1 in vitro even in the absence of recombinant Cry1. Domain-swap analysis revealed that the COOH-terminal leucine-rich repeat domain of Fbxl3 attenuates the interaction of Skp1, suggesting that a yet unknown protein associated with the COOH-terminal domain of Fbxl3 and inhibited SCF complex formation. Our results thus provide important insight into the regulation of both SCF ubiquitin ligase activity and circadian rhythmicity.

    DOI: 10.1074/jbc.M113.511303

  • F-box and WD repeat domain-containing-7 (Fbxw7) protein targets endoplasmic reticulum-anchored osteogenic and chondrogenic transcriptional factors for degradation. 査読 国際誌

    Kanae Yumimoto, Masaki Matsumoto, Ichiro Onoyama, Kazunori Imaizumi, Keiichi I Nakayama

    The Journal of biological chemistry   288 ( 40 )   28488 - 502   2013年10月

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    記述言語:英語  

    Although identification of substrates for an enzyme is a key step in elucidation of its biological functions, detection of the interaction between enzymes and substrates remains challenging. We recently developed a new approach, termed differential proteomics-based identification of ubiquitylation substrates (DiPIUS), for the discovery of substrates of ubiquitin ligases. We have now applied this approach to Fbxw7, the F-box protein component of an Skp1-Cul1-F-box protein-type ubiquitin ligase and, thereby, identified two similar transcription factors, old astrocyte specifically induced substance (OASIS) and BBF2 human homolog on chromosome 7 (BBF2H7), as candidate substrates. Coimmunoprecipitation analysis confirmed that the α and γ isoforms of Fbxw7 interact with OASIS and BBF2H7 in vivo. Sustained overexpression of Fbxw7 resulted in marked down-regulation of OASIS and BBF2H7, whereas RNAi-mediated Fbxw7 depletion stabilized both proteins. Mutation of a putative Cdc4 phosphodegron in OASIS and BBF2H7 attenuated their association with Fbxw7 and resulted in their stabilization. Depletion of Fbxw7 promoted the differentiation of mouse C2C12 mesenchymal cells into osteoblasts in association with the accumulation of OASIS. Conversely, overexpression of Fbxw7 in C2C12 cells resulted in down-regulation of Col1A1 mRNA, a target of OASIS. Conditional ablation of Fbxw7 in primary mouse mesenchymal cells promoted chondrogenesis in association with up-regulation of BBF2H7, whereas overexpression of Fbxw7 inhibited chondrogenesis in ATDC5 cells. Collectively, our results suggest that OASIS and BBF2H7 are bona fide substrates of Fbxw7 and that Fbxw7 controls osteogenesis and chondrogenesis by targeting OASIS and BBF2H7, respectively, for degradation.

    DOI: 10.1074/jbc.M113.465179

  • FBXL21 regulates oscillation of the circadian clock through ubiquitination and stabilization of cryptochromes. 査読 国際誌

    Arisa Hirano, Kanae Yumimoto, Ryosuke Tsunematsu, Masaki Matsumoto, Masaaki Oyama, Hiroko Kozuka-Hata, Tomoki Nakagawa, Darin Lanjakornsiripan, Keiichi I Nakayama, Yoshitaka Fukada

    Cell   152 ( 5 )   1106 - 18   2013年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    In the mammalian circadian clockwork, CRY1 and CRY2 repressor proteins are regulated by posttranslational modifications for temporally coordinated transcription of clock genes. Previous studies revealed that FBXL3, an F-box-type E3 ligase, ubiquitinates CRYs and mediates their degradation. Here, we found that FBXL21 also ubiquitinates CRYs but counteracts FBXL3. Fbxl21(-/-) mice exhibited normal periodicity of wheel-running rhythms with compromised organization of daily activities, while an extremely long-period phenotype of Fbxl3(-/-) mice was attenuated in Fbxl3/Fbxl21 double-knockout mice. The double knockout destabilized the behavioral rhythms progressively and sometimes elicited arrhythmicity. Surprisingly, FBXL21 stabilized CRYs and antagonized the destabilizing action by FBXL3. Predominantly cytosolic distribution of FBXL21 contrasts with nuclear localization of FBXL3. These results emphasize the physiological importance of antagonizing actions between FBXL21 and FBXL3 on CRYs, and their combined actions at different subcellular locations stabilize oscillation of the circadian clock.

    DOI: 10.1016/j.cell.2013.01.054

  • Increased efficiency in the generation of induced pluripotent stem cells by Fbxw7 ablation. 査読 国際誌

    Yasutaka Okita, Akinobu Matsumoto, Kanae Yumimoto, Rieko Isoshita, Keiichi I Nakayama

    Genes to cells : devoted to molecular & cellular mechanisms   17 ( 9 )   768 - 77   2012年9月

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    記述言語:英語  

    Induced pluripotent stem cells (iPSCs) share many biological properties with embryonic stem cells (ESCs), and are generated from somatic cells by expression of some transcription factors such as Oct3/4, Sox2, Klf4 and c-Myc. Among these factors, the abundance of c-Myc is strictly regulated by Fbxw7, a subunit of Skp1-Cul1-F-box protein-type ubiquitin ligase. We have now shown that the expression of Fbxw7 was increased as ESCs differentiated. To investigate the role of Fbxw7 in the ESCs/iPSCs, we examined the impact of Fbxw7 ablation in the efficiency in iPSC generation. The frequency of iPSC generation from mouse embryonic fibroblasts (MEFs) lacking Fbxw7 was markedly greater than that from control MEFs. Depletion of Fbxw7 also resulted in promotion of iPSC generation. Morphology of iPSC clonies from Fbxw7-depleted MEFs appeared more undifferentiated than that from MEFs overexpressing c-Myc. Additional depletion of c-Myc did not abrogate the effect of Fbxw7 depletion, suggesting that c-Myc accumulation is not necessarily required for the increased efficiency in iPSC generation by Fbxw7 ablation. Substrates of Fbxw7 other than c-Myc might therefore play a key role in iPSC generation. These results suggest that transient inhibition of Fbxw7 would be a more promising approach to efficient generation of iPSCs than c-Myc over-expression.

    DOI: 10.1111/j.1365-2443.2012.01626.x

  • Comprehensive identification of substrates for F-box proteins by differential proteomics analysis. 査読 国際誌

    Kanae Yumimoto, Masaki Matsumoto, Koji Oyamada, Toshiro Moroishi, Keiichi I Nakayama

    Journal of proteome research   11 ( 6 )   3175 - 85   2012年6月

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    記述言語:英語  

    Although elucidation of enzyme-substrate relations is fundamental to the advancement of biology, universal approaches to the identification of substrates for a given enzyme have not been established. It is especially difficult to identify substrates for ubiquitin ligases, given that most such substrates are immediately ubiquitylated and degraded as a result of their association with the enzyme. We here describe the development of a new approach, DiPIUS (differential proteomics-based identification of ubiquitylation substrates), to the discovery of substrates for ubiquitin ligases. We applied DiPIUS to Fbxw7α, Skp2, and Fbxl5, three of the most well-characterized F-box proteins, and identified candidate substrates including previously known targets. DiPIUS is thus a powerful tool for unbiased and comprehensive screening for substrates of ubiquitin ligases.

    DOI: 10.1021/pr201216u

  • Identification of two isoforms of Dsk2-related protein XDRP1 in Xenopus eggs 査読

    Kanae Tanaka, Minoru Funakoshi, Kazue Inoue, Hideki Kobayashi

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   350 ( 3 )   768 - 773   2006年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    The budding yeast UbL-UBA protein Dsk2 has a UbL domain at its N-terminus and a UBA domain at its C-terminus, and thus functions as a shuttle protein in the ubiquitin-proteasome pathway. In this report we describe two isoforms of Xenopus Dsk2-related protein, XDRP1L and XDRP1S. Difference of the two proteins in sequence was that the UbL domain of XDRP1S lacks 15 residues in the middle part of that of XDRP1L. Both XDRP1L and XDRP1S were expressed in Xenopus eggs. XDRP1L and XDRP1S bound to polyubiquitinated proteins via their UBA domains. XDRP1L also bound to the proteasome via its UbL domain, whereas the XDRP1S UbL domain was less likely to bind to the proteasome. Instead, XDRP1S not XDRP1L bound to monomeric cyclin A and prevented its degradation. The existence of such Dsk2-isoforms in Xenopus eggs suggests that the shuttling function via the UbLUBA protein Dsk2 is evolutionally conserved across species. (c) 2006 Elsevier Inc. All rights reserved.

    DOI: 10.1016/j.bbrc.2006.09.123

  • A Cdc2-sensitive interaction of the UbL domain of XDRP1S with cyclin B mediates the degradation of cyclin B in Xenopus egg extracts 査読

    Kanae Tanaka, Minoru Funakoshi, Hideki Kobayashi

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   350 ( 3 )   774 - 782   2006年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    The yeast UbL-UBA protein Dsk2 is thought to act as a shuttle protein that delivers polyubiquitinated proteins to the proteasome. Previously, we identified Xenopus Dsk2-related protein, XDRP1, as a cyclin A-interacting protein. Using Xenopus egg extracts, we further characterized its two isoforms, XDRP1L and XDRP1S, with respect to cyclin binding and its degradation. Polyubiquitinated cyclins bound to the UBA domain of XDRP1L and XDRP1S, whereas monomeric cyclins A and B bound to the UbL domain of XDRP1S but not to XDRP1L. Binding of XDRP1S with monomeric cyclins was affected by a Cdc2-mediated phosphorylation of either the XDRP1S UbL domain or cyclins. Degradation of cyclin B was also prevented by XDRP1S in a Cdc2-sensitive manner. Loss of the XDRP1S-cyclin interaction allowed cyclins to be degraded in calcium-treated CSF extracts. These results suggest that the shuttling pathway via the UbL-UBA protein XDRP1 participates in degradation of mitotic cyclins in Xenopus eggs. (c) 2006 Elsevier Inc. All rights reserved.

    DOI: 10.1016/j.bbrc.2006.09.122

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MISC

  • Keap1の分子進化は脊椎動物の地上生活への適応に必須だった:陸上の高活性酸素に対する適応機構の解明

    弓本佳苗, 中山敬一

    実験医学   41 ( 16 )   2641 - 2644   2023年10月

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    担当区分:筆頭著者  

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  • 【動き始めたがんゲノム医療 深化と普及のための基礎研究課題】(第2章)actionableパスウェイ ユビキチン・プロテアソーム系(UPS)とがん治療戦略

    弓本 佳苗, 中山 敬一

    実験医学   2018年9月

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    記述言語:日本語  

    第1世代のプロテアソーム阻害剤であるbortezomibが血液悪性腫瘍の治療に有効であることが示されて以降、ユビキチン・プロテアソーム系(ubiquitin-proteasome system:UPS)のがん治療標的としての可能性がますます注目されはじめている。がん細胞は細胞増殖やアポトーシスの回避、上皮間葉移行やがん幹細胞の維持等、種々の場面でUPSを利用しており、プロテアソームのみならずUPSの他の構成因子をも治療標的とする試みが広まりつつある。本稿では、さまざまなUPS構成因子を標的としたがん治療戦略の最近の進展について概説したい。(著者抄録)

  • 【がん転移学(上)-がん転移のメカニズムと治療戦略:その基礎と臨床-】がん転移学の基礎研究 がんの浸潤と転移のメカニズム

    杉山 成明, 弓本 佳苗, 中山 敬一

    日本臨床   2017年11月

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    記述言語:日本語  

  • がん抑制因子のがんニッチ細胞における機能

    弓本 佳苗, 中山 敬一

    がん分子標的治療   2016年4月

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    記述言語:日本語  

    がん抑制因子は古典的には細胞の増殖を抑制したりアポトーシスを誘導する因子群を指すが、その研究のほとんどはがん細胞内における細胞自律的なメカニズムに焦点が当たっていた。しかし近年、がん組織ではがん細胞を取り巻く周辺ニッチ細胞ががんの進展を助長していることが明らかになり、これらのがんニッチ細胞は遺伝学的あるいはエピジェネティックに変化していることが示唆されはじめている。本稿では長らくがん抑制因子として研究されてきた分子群が、がんニッチ細胞においても腫瘍の抑制に関わっているという新たな機能を概説する。驚くべきことにこれらはいずれも炎症性応答を抑制する機能をもつことが明らかになってきた。あわせて、がんニッチ細胞が腫瘍の生存や増殖を促進する形質を獲得するメカニズムおよび治療への応用についても議論したい。(著者抄録)

  • ユビキチンリガーゼFbxw7はがんニッチ形成を抑制する

    弓本佳苗、中山敬一

    2015年8月

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    記述言語:日本語   掲載種別:記事・総説・解説・論説等(学術雑誌)  

  • 拡大するF-boxタンパク質の世界

    弓本佳苗、中山敬一

    2010年12月

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    記述言語:日本語   掲載種別:記事・総説・解説・論説等(学術雑誌)  

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所属学協会

  • 日本分子生物学会

  • 日本分子生物学会

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共同研究・競争的資金等の研究課題

  • ユビキチンリガーゼの組み合わせによる新たな標的拡張メカニズム

    研究課題/領域番号:24K09382  2024年 - 2026年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

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    担当区分:研究代表者  資金種別:科研費

  • ヘテロユビキチンリガーゼがもたらすユビキチン化基質認識機構の新展開

    研究課題/領域番号:24H01902  2024年 - 2025年

    日本学術振興会・文部科学省  科学研究費助成事業  学術変革領域研究(A)

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    担当区分:研究代表者  資金種別:科研費

  • 播種性腫瘍細胞を標的とした革新的ながん治療法の開発

    2021年 - 2024年

    戦略的創造研究推進事業 (文部科学省)

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    資金種別:受託研究

  • 抗腫瘍獲得免疫・NK細胞非依存の新規がん転移抑制ニッチの解明および治療応用

    研究課題/領域番号:20K07592  2020年 - 2022年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

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    担当区分:研究代表者  資金種別:科研費

  • 乳がん細胞における免疫チェックポイント回避機構の分子基盤の解明

    2019年 - 2022年

    日本学術振興会  特別研究員

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    担当区分:研究代表者  資金種別:共同研究

  • がん細胞依存性炎症が全身に及ぼす影響の統合的解明

    研究課題/領域番号:18H05037  2018年 - 2019年

    日本学術振興会・文部科学省  科学研究費助成事業  新学術領域研究(研究領域提案型)

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    担当区分:研究代表者  資金種別:科研費

  • 内藤記念女性研究者研究助成金

    2018年

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    資金種別:寄附金

  • 免疫チェックポイント阻害時に働く第二のがん免疫回避機構の同定

    研究課題/領域番号:17K07171  2017年 - 2019年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

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    担当区分:研究代表者  資金種別:科研費

  • リン酸化プロテオミクスによるネオセルフを決定する胸腺T細胞シグナル伝達機構の解明

    研究課題/領域番号:17H05795  2017年 - 2018年

    日本学術振興会・文部科学省  科学研究費助成事業  新学術領域研究(研究領域提案型)

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    担当区分:研究代表者  資金種別:科研費

  • ユビキチン化酵素Fbxw7が癌ニッチで果たす転移抑制メカニズムの解明

    研究課題/領域番号:15H05575  2015年 - 2016年

    科学研究費助成事業  若手研究(A)

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    担当区分:研究代表者  資金種別:科研費

  • ユビキチン酵素標的を網羅的に探索する革新的技術基盤の確立

    研究課題/領域番号:15H01186  2015年 - 2016年

    日本学術振興会・文部科学省  科学研究費助成事業  新学術領域研究(研究領域提案型)

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    担当区分:研究代表者  資金種別:科研費

  • ユビキチンリガーゼ疾患の発症機構の解明

    研究課題/領域番号:25860241  2013年 - 2015年

    科学研究費助成事業  若手研究(B)

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    担当区分:研究代表者  資金種別:科研費

  • F-boxタンパク質-基質関係の網羅的探索方法の確立、およびその生理的機能解析

    2008年 - 2009年

    日本学術振興会  特別研究員

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    担当区分:研究代表者  資金種別:共同研究

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担当授業科目

  • 生物化学IV

    2024年10月 - 2025年3月   後期

  • 身の回りの化学

    2024年6月 - 2024年8月   夏学期

  • 身の回りの化学

    2024年6月 - 2024年8月   夏学期

メディア報道

  • 3億年前、動物はこうして陸上に進出した! 新聞・雑誌

    月刊ジュニアエラ8月号  2023年7月

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    3億年前、動物はこうして陸上に進出した!

  • Response to reactive oxygen species the key to transition of organisms to a terrestrial environment — Kyushu University unravels a mystery of evolution

    Science Japan  2023年6月

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    Response to reactive oxygen species the key to transition of organisms to a terrestrial environment — Kyushu University unravels a mystery of evolution

  • なぜ生物は水中から陸に進出し生活?「進化の謎」解くたんぱく質を特定…九大チーム

    読売新聞オンライン  2023年5月

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    なぜ生物は水中から陸に進出し生活?「進化の謎」解くたんぱく質を特定…九大チーム

  • 生物の陸上進出 活性酸素対応がカギ 新聞・雑誌

    科学新聞  2023年5月

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    生物の陸上進出 活性酸素対応がカギ

  • がん転移抑える薬剤 九大、マウスで確認 新聞・雑誌

    日本経済新聞 朝刊  2015年1月

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    がん転移抑える薬剤 九大、マウスで確認

  • 既存薬でがん転移抑制 新聞・雑誌

    毎日新聞 朝刊  2015年1月

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    既存薬でがん転移抑制

  • B型肝炎治療薬 がん転移抑える可能性 新聞・雑誌

    朝日新聞 朝刊  2015年1月

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    B型肝炎治療薬 がん転移抑える可能性

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