Updated on 2024/11/28

Information

 

写真a

 
NOSHITA KOJI
 
Organization
Faculty of Science Department of Biology Assistant Professor
Plant Frontier Research Center （Concurrent）
School of Sciences Department of Biology（Concurrent）
Graduate School of Systems Life Sciences Department of Systems Life Sciences（Concurrent）
Joint Graduate School of Mathematics for Innovation （Concurrent）
Title
Assistant Professor
Contact information
メールアドレス
Profile
生物や生物のつくる構造物のかたちを進化形態学的，形態測定学的観点から，幅広く興味をもって研究をしています． 特に，動物（腹足類（巻貝），マウス），植物（ダイズ，コムギ，キャッサバ），人工物（土器）などを対象に数理モデルや画像解析，計測手法の開発を活用した解析を進めています．
Homepage
External link

Research Areas

  • Environmental Science/Agriculture Science / Agricultural environmental engineering and agricultural information engineering

  • Life Science / Ecology and environment

  • Life Science / Morphology and anatomical structure

  • Natural Science / Biogeosciences

Degree

  • Ph.D., Kyushu University

  • M.S., Kyushu University

  • B.S., Shizuoka University

Research History

  • Kyushu University Faculty of Science Assistant Professor

    2018.4 - Present

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Research Interests・Research Keywords

  • Research theme：Plant phenotyping

    Keyword：Plant phenotyping

    Research period： 2024

  • Research theme：Mathematical biology

    Keyword：Mathematical biology

    Research period： 2024

  • Research theme：Morphometrics

    Keyword：Morphometrics

    Research period： 2024

  • Research theme：Theoretical morphology

    Keyword：Theoretical morphology

    Research period： 2024

  • Research theme：Malacology

    Keyword：Malacology

    Research period： 2024

Awards

  • 日本数理生物学会研究奨励賞

    2024.8   日本数理生物学会  

    野下 浩司

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Papers

  • Possible roles of Wnt in the shell growth of the pond snail Lymnaea stagnalis

    Shigeaki Ohta, Koji Noshita, Katsunori Kimoto, Akito Ishikawa, Hideaki Sato, Keisuke Shimizu, Kazuyoshi Endo

    Scientific Reports   14 ( 1 )   26488   2024.11   （ eISSN:2045-2322 ）

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    Language：English   Publishing type：Research paper (scientific journal)   Publisher：Springer Science and Business Media LLC  

    DOI： 10.1038/s41598-024-74794-7

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    Other Link： https://www.nature.com/articles/s41598-024-74794-7

  • Three-Dimensional Leaf Edge Reconstruction Combining Two- and Three-Dimensional Approaches Reviewed

    Hidekazu Murata, Koji Noshita

    Plant Phenomics   6   0181   2024.5   （ ISSN:2643-6515 ）

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.34133/plantphenomics.0181

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  • Macro-Scale Population Patterns in the Kofun Period of the Japanese Archipelago: Quantitative Analysis of a Larger Sample of Three-Dimensional Data from Ancient Human Crania Reviewed

    Hisashi Nakao, Akihiro Kaneda, Kohei Tamura, Koji Noshita, Tomomi Nakagawa

    Humans   4 ( 2 )   131 - 147   2024.4   （ eISSN:2673-9461 ）

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    Language：Others   Publishing type：Research paper (scientific journal)   Publisher：MDPI AG  

    The present study collected a larger set of three-dimensional data on human crania from the Kofun period (as well as from previous periods, i.e., the Jomon and Yayoi periods) in the Japanese archipelago (AD 250 to around 700) than previous studies. Three-dimensional geometric morphometrics were employed to investigate human migration patterns in finer-grained phases. These results are consistent with those of previous studies, although some new patterns were discovered. These patterns were interpreted in terms of demic diffusion, archaeological findings, and historical evidence. In particular, the present results suggest the presence of a gradual geological cline throughout the Kofun period, although the middle period did not display such a cline. This discrepancy might reflect social changes in the middle Kofun period, such as the construction of keyhole-shaped mounds in the peripheral regions. The present study implies that a broader investigation with a larger sample of human crania is essential to elucidating macro-level cultural evolutionary processes.

    DOI： 10.3390/humans4020008

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  • Demic Diffusion of the Yayoi People in the Japanese Archipelago Reviewed

    Hisashi Nakao, Tomomi Nakagawa, Akihiro Kaneda, Kohei Tamura, Koji Noshita

    Letters on Evolutionary Behavioral Science   14 ( 2 )   2023.11   （ eISSN:1884-927X ）

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    Language：Others   Publishing type：Research paper (scientific journal)   Publisher：Human Behavior and Evolution Society of Japan  

    The present study examines the 3-dimensional data of human crania from the Yayoi period (800 BC to AD 250) of the Japanese archipelago by geometric morphometrics to investigate demic diffusion patterns. This is the first study on the Yayoi crania using their 3D data and geometric morphometrics with a much larger number of skeletal remains outside of the Kyushu regions than previous studies. The comparative results between the Jōmon and Yayoi samples show that the Yayoi people not only in the eastern parts but also in the western parts of the archipelago are significantly different from the final Jōmon people and the Yayoi people were not strongly affected by the Jōmon people. A relatively gradual geological cline is also found among the Yayoi population, suggesting that the immigrants from the continental East Asia moved from the western parts to the eastern parts of the archipelago though the causes of the morphological changes are unclear.

    DOI： 10.5178/lebs.2023.111

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  • Network feature-based phenotyping of leaf venation robustly reconstructs the latent space Reviewed

    Kohei Iwamasa, Koji Noshita

    PLOS Computational Biology   19 ( 7 )   e1010581   2023.7   （ ISSN:1553-734X eISSN:1553-7358 ）

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pcbi.1010581

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  • Theoretical morphological analysis of differential morphospace occupation patterns for terrestrial and aquatic gastropods Reviewed

    Amane Araki, Koji Noshita

    Evolution   2023.7

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.1093/evolut/qpad110

  • Smoking enhances the expression of angiotensin‐converting enzyme 2 involved in the efficiency of severe acute respiratory syndrome coronavirus 2 infection Invited Reviewed International journal

    67   22 - 31   2023.6

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1111/1348-0421.13034

  • Theoretical morphological analysis of differential morphospace occupation patterns for terrestrial and aquatic gastropods Reviewed International journal

    #Araki, A., Noshita, K.

    Evolution   2023.6

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1093/evolut/qpad110

  • 特集 未病の科学 Ⅰ.未病の数理研究 "かたち"のフェノーム数理解析への汎用形態記述子によるアプローチ

    野下 浩司

    生体の科学   74 ( 2 )   123 - 128   2023.4   （ ISSN:03709531 eISSN:18835503 ）

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    Authorship：Lead author,　Corresponding author   Publisher：株式会社医学書院  

    DOI： 10.11477/mf.2425201656

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  • The Process of 3D Digitization and Data Sharing in Archaeology: A Case Study of Ongagawa-Style Pottery and Skeletal Remains in Japan

    Tamura, K; Nakagawa, T; Noshita, K; Kaneda, A; Nakao, H

    AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY   180   174 - 174   2023.4   （ ISSN:2692-7691 ）

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  • 喫煙はSARS-Cov-2感染効率に関与するアンジオテンシン変換酵素2発現を亢進させる(Smoking enhances the expression of angiotensin-converting enzyme 2 involved in the efficiency of severe acute respiratory syndrome coronavirus 2 infection)

    Suzuki Rigel, Ono Yuki, Noshita Koji, Kim Kwang Su, Ito Hayato, Morioka Yuhei, Tamura Tomokazu, Okuzaki Daisuke, Tagawa Tetsuzo, Takenaka Tomoyoshi, Yoshizumi Tomoharu, Shimamura Teppei, Iwami Shingo, Fukuhara Takasuke

    Microbiology and Immunology   67 ( 1 )   22 - 31   2023.1   （ ISSN:0385-5600 ）

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    Language：English   Publisher：John Wiley & Sons Australia, Ltd  

    喫煙歴とSARS-Cov-2感染性との関係性について検討した。2013年1月～2019年12月までの期間内に、著者等の医療施設で外科治療で採取した肺組織試料を用い、喫煙者、喫煙歴ありの非喫煙者、非喫煙者肺から検出されるアンジオテンシン変換酵素2(ACE2)の遺伝子発現を調査した。その結果、禁煙期間6ヵ月未満の患者ではACE2遺伝子発現量が、非喫煙者や禁煙期間6ヵ月以上の患者から検出された発現量に比べ高発現であった。また、SARS-Cov-2の感染効率はACE2発現量に依存して亢進し、喫煙者肺のRNA-seq解析では、炎症シグナル伝達に関与する遺伝子発現がACE2遺伝子発現と相関することが明らかにされた。なかでも、過去に喫煙歴がある患者では、禁煙期間が長いほどACE2遺伝子発現量のみならず、炎症シグナル伝達に関与する遺伝子発現量でも低下が認められた。以上より、喫煙はACE2遺伝子と炎症シグナル伝達に関与する遺伝子発現量を亢進させ、SARS-Cov-2への感染効率は、喫煙を介したACE2遺伝子発現量のアップレギュレーションにより増強されることが示唆された。

  • Exploring the mechanical and morphological rationality of tree branch structure based on 3D point cloud analysis and the finite element method Reviewed

    Satoru Tsugawa, Kaname Teratsuji, Fumio Okura, Koji Noshita, Masaki Tateno, Jingyao Zhang, Taku Demura

    Scientific Reports   12 ( 1 )   4054   2022.12   （ ISSN:2045-2322 eISSN:2045-2322 ）

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    Language：English   Publishing type：Research paper (scientific journal)   Publisher：Springer Science and Business Media {LLC}  

    <jats:title>Abstract</jats:title><jats:p>Trees are thought to have acquired a mechanically optimized shape through evolution, but a scientific methodology to investigate the mechanical rationality of tree morphology remains to be established. The aim of this study was to develop a new method for 3D reconstruction of actual tree shape and to establish a theoretical formulation for elucidating the structure and function of tree branches. We obtained 3D point cloud data of tree shape of Japanese zelkova (<jats:italic>Zelkova serrata</jats:italic>) and Japanese larch (<jats:italic>Larix kaempferi</jats:italic>) using the NavVis Lidar scanner, then applied a cylinder structure extraction from point cloud data with error estimation. We then formulated the mechanical stress of branches under gravity using the elastic theory, and performed finite element method simulations to evaluate the mechanical characteristics. Subsequently, we constructed a mechanics-based theoretical formulation of branch development that ensures constant bending stress produces various branching patterns depending on growth properties. The derived theory recapitulates the trade-off among branch growth anisotropy, stress-gravity length, and branch shape, which may open the quantitative way to evaluate mechanical and morphological rationality of tree branches.</jats:p>

    DOI： 10.1038/s41598-022-08030-5

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    Other Link： https://www.nature.com/articles/s41598-022-08030-5

  • Smoking enhances the expression of angiotensin-converting enzyme 2 involved in the efficiency of severe acute respiratory syndrome coronavirus 2 infection. Reviewed International journal

    Rigel Suzuki, Yuki Ono, Koji Noshita, Kwang Su Kim, Hayato Ito, Yuhei Morioka, Tomokazu Tamura, Daisuke Okuzaki, Tetsuzo Tagawa, Tomoyoshi Takenaka, Tomoharu Yoshizumi, Teppei Shimamura, Shingo Iwami, Takasuke Fukuhara

    Microbiology and immunology   67 ( 1 )   22 - 31   2022.10

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1111/1348-0421.13034

  • A proposal of a new automated method for SfM/MVS 3D reconstruction through comparisons of 3D data by SfM/MVS and handheld laser scanners Reviewed International journal

    @Kaneda, A., @Nakagawa, T., @Tamura, K., Noshita, K., @Nakao, H.

    PLoS ONE   17   e0270660   2022.7

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    Language：Japanese   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pone.0270660

  • A proposal of a new automated method for SfM/MVS 3D reconstruction through comparisons of 3D data by SfM/MVS and handheld laser scanners Reviewed

    Akihiro Kaneda, Tomomi Nakagawa, Kohei Tamura, Koji Noshita, Hisashi Nakao

    PLOS ONE   17 ( 7 )   e0270660 - e0270660   2022.7

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pone.0270660

  • 遠賀川式土器を例とした三次元モデルと二次元 実測図データの比較 Reviewed

    野下 浩司, 金田 明大, 田村 光平, 中尾 央

    情報考古学   27   1 - 10   2022

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  • 遠賀川式土器の形態に関する数理的考察 ―田村 遺跡、矢野遺跡、綾羅木郷遺跡を中心に―. Reviewed

    野下 浩司, 金田 明大, 田村 光平, 中尾 央

    奈文研論叢   3   65 - 82   2022

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  • Tracing founder haplotypes of Japanese apple varieties: application in genomic prediction and genome-wide association study Reviewed International journal

    Mai F. Minamikawa, Miyuki Kunihisa, Koji Noshita, Shigeki Moriya, Kazuyuki Abe, Takeshi Hayashi, Yuichi Katayose, Toshimi Matsumoto, Chikako Nishitani, Shingo Terakami, Toshiya Yamamoto, Hiroyoshi Iwata

    Horticulture Research   8 ( 1 )   49 - 49   2021.12

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1038/s41438-021-00485-3

  • Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials: A modeling study Reviewed

    Shoya Iwanami, Keisuke Ejima, Kwang Su Kim, Koji Noshita, Yasuhisa Fujita, Taiga Miyazaki, Shigeru Kohno, Yoshitsugu Miyazaki, Shimpei Morimoto, Shinji Nakaoka, Yoshiki Koizumi, Yusuke Asai, Kazuyuki Aihara, Koichi Watashi, Robin N. Thompson, Kenji Shibuya, Katsuhito Fujiu, Alan S. Perelson, Shingo Iwami, Takaji Wakita

    PLOS Medicine   18 ( 7 )   e1003660 - e1003660   2021.7

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pmed.1003660

  • GIS-Based Analysis for UAV-Supported Field Experiments Reveals Soybean Traits Associated With Rotational Benefit Reviewed

    Yuya Fukano, Wei Guo, Naohiro Aoki, Shinjiro Ootsuka, Koji Noshita, Kei Uchida, Yoichiro Kato, Kazuhiro Sasaki, Shotaka Kamikawa, Hirofumi Kubota

    Frontiers in Plant Science   12   2021.5

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.3389/fpls.2021.637694

  • Phylogeography and shell morphology of the pelagic snail Limacina helicina in the Okhotsk Sea and western North Pacific Reviewed

    Keisuke Shimizu, Koji Noshita, Katsunori Kimoto, Takenori Sasaki

    Marine Biodiversity   51 ( 2 )   2021.4

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1007/s12526-021-01166-z

  • Climate-smart crops: key root anatomical traits that confer flooding tolerance Reviewed

    Takaki Yamauchi, Koji Noshita, Nobuhiro Tsutsumi

    Breeding Science   71 ( 1 )   51 - 61   2021.1

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1270/jsbbs.20119

  • Field‐based individual plant phenotyping of herbaceous species by unmanned aerial vehicle Reviewed

    10 ( 21 )   12318 - 12326   2020.11

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    Language：Others   Publishing type：Research paper (scientific journal)  

    DOI： 10.1002/ece3.6861

  • Field‐based individual plant phenotyping of herbaceous species by unmanned aerial vehicle Reviewed International journal

    10   12318 - 12326   2020.10

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1002/ece3.6861

  • A theoretical morphological model for quantitative description of the three-dimensional floral morphology in water lily (Nymphaea) Reviewed

    Shiryu Kirie, Hideo Iwasaki, Koji Noshita, Hiroyoshi Iwata

    PLOS ONE   15 ( 10 )   e0239781 - e0239781   2020.10

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pone.0239781

  • Application of deep learning for the occupational health of VDT workers Reviewed

    Mitsuo Uchida, Koji Noshita, Hiroshi Koyama

    Sangyo eiseigaku zasshi = Journal of occupational health   61 ( 6 )   256 - 260   2019.11

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1539/sangyoeisei.2018-040-C

  • Comparison of shape quantification methods for genomic prediction, and genome-wide association study of sorghum seed morphology Reviewed

    Lisa Sakamoto, Hiromi Kajiya-Kanegae, Koji Noshita, Hideki Takanashi, Masaaki Kobayashi, Toru Kudo, Kentaro Yano, Tsuyoshi Tokunaga, Nobuhiro Tsutsumi, Hiroyoshi Iwata

    PloS one   14 ( 11 )   2019.11

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1371/journal.pone.0224695

  • What is cost-efficient phenotyping? Optimizing costs for different scenarios Reviewed

    Plant Science   282   14 - 22   2019.5

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1016/j.plantsci.2018.06.015

  • Genotype-aggregated planting improves yield in Jerusalem artichoke (Helianthus tuberosus) due to self/non-self-discrimination Reviewed

    Yuya Fukano, Wei Guo, Koji Noshita, Shoko Hashida, Shotaka Kamikawa

    Evolutionary Applications   12 ( 3 )   508 - 518   2019.3

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1111/eva.12735

  • Application of a deep learning for occupational health and safety recognition a pilot study in a logistics industry Reviewed

    Mitsuo Uchida, Koji Noshita, Yasuhiro Tsutsui, Hiroshi Koyama

    Sangyo eiseigaku zasshi = Journal of occupational health   60 ( 6 )   191 - 195   2018.12

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1539/sangyoeisei.2018-022-C

  • Characterization of peach tree crown by using high-resolution images from an unmanned aerial vehicle Reviewed

    Yue Mu, Yuichiro Fujii, Daisuke Takata, Bangyou Zheng, Koji Noshita, Kiyoshi Honda, Seishi Ninomiya, Wei Guo

    Horticulture Research   5 ( 1 )   2018.12

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1038/s41438-018-0097-z

  • Phylogeography of the pelagic snail Limacina helicina (Gastropoda Thecosomata) in the subarctic western North Pacific Reviewed

    Keisuke Shimizu, Katsunori Kimoto, Koji Noshita, Masahide Wakita, Tetsuichi Fujiki, Takenori Sasaki

    Journal of Molluscan Studies   84 ( 1 )   30 - 37   2018.2

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1093/mollus/eyx040

  • Aerial imagery analysis – Quantifying appearance and number of sorghum heads for applications in breeding and agronomy Reviewed

    871   2018.1

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    Language：English   Publishing type：Research paper (scientific journal)  

    Sorghum (Sorghum bicolor L. Moench) is a C4 tropical grass that plays an essential role in providing nutrition to humans and livestock, particularly in marginal rainfall environments. The timing of head development and the number of heads per unit area are key adaptation traits to consider in agronomy and breeding but are time consuming and labor intensive to measure. We propose a two-step machine-based image processing method to detect and count the number of heads from high-resolution images captured by unmanned aerial vehicles (UAVs) in a breeding trial. To demonstrate the performance of the proposed method, 52 images were manually labeled; the precision and recall of head detection were 0.87 and 0.98, respectively, and the coefficient of determination (R
    2
    ) between the manual and new methods of counting was 0.84. To verify the utility of the method in breeding programs, a geolocation-based plot segmentation method was applied to pre-processed ortho-mosaic images to extract >1000 plots from original RGB images. Forty of these plots were randomly selected and labeled manually; the precision and recall of detection were 0.82 and 0.98, respectively, and the coefficient of determination between manual and algorithm counting was 0.56, with the major source of error being related to the morphology of plants resulting in heads being displayed both within and outside the plot in which the plants were sown, i.e., being allocated to a neighboring plot. Finally, the potential applications in yield estimation from UAV-based imagery from agronomy experiments and scouting of production fields are also discussed.

    DOI： 10.3389/fpls.2018.01544

  • A heart-brain-kidney network controls adaptation to cardiac stress through tissue macrophage activation Reviewed

    Katsuhito Fujiu, Munehiko Shibata, Yukiteru Nakayama, Fusa Ogata, Sahohime Matsumoto, Koji Noshita, Shingo Iwami, Susumu Nakae, Issei Komuro, Ryozo Nagai, Ichiro Manabe

    Nature medicine   23 ( 5 )   611 - 622   2017.5

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1038/nm.4326

  • Geometric analysis and estimation of the growth rate gradient on gastropod shells Reviewed

    Koji Noshita, Keisuke Shimizu, Takenori Sasaki

    Journal of Theoretical Biology   389   11 - 19   2016.1

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1016/j.jtbi.2015.10.011

  • Quantification and geometric analysis of coiling patterns in gastropod shells based on 3D and 2D image data Reviewed

    Koji Noshita

    Journal of Theoretical Biology   363   93 - 104   2014.12

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1016/j.jtbi.2014.08.010

  • Functional constraints on coiling geometry and aperture inclination in gastropods Reviewed

    Koji Noshita, Takahiro Asami, Takao Ubukata

    Paleobiology   38 ( 2 )   322 - 334   2012.3

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    Language：English   Publishing type：Research paper (scientific journal)  

    DOI： 10.1666/10060.1

  • Spiral Shell Form A computer software package for theoretical morphological analysis of spiral shell form Reviewed

    Koji Noshita

    Geoscience Reports of the Shizuoka University   ( 37 )   57 - 73   2010.7

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    Language：English   Publishing type：Research paper (scientific journal)  

  • Model-based plant phenomics on morphological traits using morphometric descriptors Invited Reviewed International journal

    Noshita, K., #Murata, H., @Kirie, S.

    BREEDING SCIENCE   72 ( 1 )   19 - 30   1900   （ ISSN:13447610 eISSN:13473735 ）

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    Language：English   Publishing type：Research paper (scientific journal)   Publisher：Japanese Society of Breeding  

    <p>The morphological traits of plants contribute to many important functional features such as radiation interception, lodging tolerance, gas exchange efficiency, spatial competition between individuals and/or species, and disease resistance. Although the importance of plant phenotyping techniques is increasing with advances in molecular breeding strategies, there are barriers to its advancement, including the gap between measured data and phenotypic values, low quantitativity, and low throughput caused by the lack of models for representing morphological traits. In this review, we introduce morphological descriptors that can be used for phenotyping plant morphological traits. Geometric morphometric approaches pave the way to a general-purpose method applicable to single units. Hierarchical structures composed of an indefinite number of multiple elements, which is often observed in plants, can be quantified in terms of their multi-scale topological characteristics using topological data analysis. Theoretical morphological models capture specific anatomical structures, if recognized. These morphological descriptors provide us with the advantages of model-based plant phenotyping, including robust quantification of limited datasets. Moreover, we discuss the future possibilities that a system of model-based measurement and model refinement would solve the lack of morphological models and the difficulties in scaling out the phenotyping processes.</p>

    DOI： 10.1270/jsbbs.21078

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Books

  • カタチの由来、データの未来 : 三次元計測の人類史学

    中尾, 央

    勁草書房  2024.2 

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    Responsible for pages：総ページ数：xii, 194p   Language：Japanese  

  • カタチの由来、データの未来 : 三次元計測の人類史学

    中尾, 央（ Role： Contributor三次元データによる研究：方法, 三次元データを用いて研究する：具体例）

    勁草書房  2024.2    （ ISBN:9784326248544 ）

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    Total pages：xii, 194p   Language：Japanese  

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  • 植物の超階層生物学 : ゲノミクス×フェノミクス×生態学でひもとく多様性

    種生物学会, 佐藤, 安弘, 村中, 智明

    文一総合出版  2023.8 

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    Responsible for pages：総ページ数：339p, 図版ivp   Language：Japanese  

  • 植物の超階層生物学 : ゲノミクス×フェノミクス×生態学でひもとく多様性

    種生物学会, 佐藤, 安弘, 村中, 智明（ Role： Contributor植物３次元形態のデータ化，定量化，モデル化）

    文一総合出版  2023.8    （ ISBN:9784829962107 ）

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    Total pages：339p, 図版ivp   Language：Japanese  

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  • Stream Fish Biodiversity and the Effects of Plantations in the Bintulu Region, Sarawak

    Yuichi Kano, Jason Hon, Khairulazman Sulaiman Mohd Khairulazman Sulaiman, Mitsuhiro Aizu, Koji Noshita, Hiromitsu Samejima

    Springer International Publishing  2020.1 

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    Responsible for pages：235-274   Language：English  

    DOI： 10.1007/978-981-13-7513-2_13

  • 新スマート農業 : 進化する農業情報利用

    農業情報学会

    農林統計出版  2019.5 

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    Responsible for pages：総ページ数：xxiv, 500p   Language：Japanese  

  • 3D Visualization of Calcified and Non-calcified Molluscan Tissues Using Computed Tomography. in Biomineralization

    Sasaki, T., Maekawa, Y., Takeda, Y., Atsushiba, M., Chen, C., Noshita, K., Uesugi, K. and Hoshino, M.（ Role： Joint author）

    Springer, Singapore  2018.10 

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    Responsible for pages：pp. 83-93.   Language：Japanese   Book type：Scholarly book

    DOI： 10.1007/978-981-13-1002-7_9

  • 幾何学的形態測定学とRを使った解析例 in 文化進化の考古学（中尾 央，松木 武彦，三中 信宏 編）

    野下 浩司，田村 光平（ Role： Joint author）

    勁草書房  2017.8 

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    Language：Japanese   Book type：Scholarly book

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Presentations

  • Plant phenotyping methods using image analysis, machine learning, mathematics, and morphometrics Invited International conference

    Noshita, K.

    ICIAM WIS2023  2023.9 

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    Event date： 2024.5

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  • ktch: モデルベース形態測定学向けPythonパッケージ

    野下 浩司

    数理生物学会  2023.9 

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    Event date： 2024.5

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  • ktch: モデルベース形態測定学向けPythonパッケージ

    野下 浩司

    生態学会  2024.3 

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    Event date： 2024.5

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  • Three-dimensional leaf edge reconstruction using a combination of two- and three-dimensional phenotyping approaches Invited International conference

    Noshita, K.

    Summit on the Frontiers of Plant Phenomics  2023.12 

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    Event date： 2024.5

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  • 葉輪郭再構築への2次元-3次元協調的アプローチ

    #村田 英和，野下 浩司．

    生態学会  2023.3 

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    Event date： 2023.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：東北大学   Country：Japan  

  • Characterization of foliage structures using persistent homology analysis International conference

    Noshita, K.

    IPPS2022  2022.9 

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    Event date： 2023.6

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  • 細胞形状と動きの形態測定学的解析

    野下 浩司

    数理生物学会  2022.9 

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    Event date： 2023.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：明治大学   Country：Japan  

  • 腹足類殻の異なる形態空間占有パターンの理論形態学的解析

    #荒木 周,野下 浩司

    第172回古生物学会例会  2023.2 

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    Event date： 2023.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：九州大学 馬出キャンパス，福岡   Country：Japan  

  • フェノタイピングの問題としての「かたち」の定量化：暗黙知の形式化へ向けて Invited

    野下 浩司

    社会課題は数理科学で解決できる！？ -試みと課題-  2021.10 

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    Event date： 2021.10

    Language：Japanese   Presentation type：Symposium, workshop panel (public)  

    Venue：名古屋大学   Country：Japan  

  • 「かたち」のモデル化・定量化のための幾何学 Invited

    野下 浩司

    生命医科学における数理科学の最前線：データサイエンスから代数・幾何・記号学まで - さらなる展開を目指して  2021.10 

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    Event date： 2021.10

    Language：Japanese   Presentation type：Symposium, workshop panel (public)  

    Country：Japan  

  • 輪郭形状解析におけるレジストレーション:軸と対称不整合についての比較

    野下 浩司

    数理生物学会  2021.9 

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    Event date： 2021.9

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：宮崎大学   Country：Japan  

  • 草姿・草型のフェノタイピング：3次元計測と「かたち」の数理モデル化 Invited

    野下 浩司

    日本植物学会 第８５回大会 シンポジウム 植物科学を変える先端分析技術と大規模データ統合解析  2021.9 

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    Event date： 2021.9

    Language：Japanese   Presentation type：Symposium, workshop panel (public)  

    Venue：オンライン，ホスト：東京都立大学   Country：Japan  

  • Morphometrics and its applications Invited International conference

    Noshita, K.

    Mathematical methods for the studies of flow, shape, and dynamics  2021.8 

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    Event date： 2021.8

    Language：English   Presentation type：Symposium, workshop panel (public)  

    Country：Japan  

  • 植物の「かたち」を測る・モデル化する：数理モデルの構築・定量化の理論提案・植物フェノタイピング技術の開発

    野下 浩司

    超分野植物科学研究会（TDPS） 第1回研究会  2021.6 

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    Event date： 2021.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン   Country：Japan  

  • 葉群の空間パターンとしての草姿・草型の定量的表現：相同性が自明でない場合の形態測定学に向けて．

    野下 浩司

    第16回 生物数学の理論とその応用 ～生命現象の定量的理解に向けて～  2020.1 

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    Event date： 2021.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：京都大学 数理解析研究所   Country：Japan  

  • Quantitative Representation of Plant Style as Spacial Pattern of Foliage for Morphometrics on ill-defined Homology International conference

    Noshita, K.

    Phenome2020  2020.2 

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    Event date： 2021.6

    Language：English   Presentation type：Oral presentation (general)  

    Country：United States  

  • “異常巻き”を含む貝殻巻きパタンの定量的解析・モデル化

    野下 浩司

    2020年度日本数理生物学会年会  2020.9 

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    Event date： 2021.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：名古屋大学   Country：Japan  

  • kaigara：貝殻理論形態学Pythonパッケージ

    野下 浩司

    古生物学会  2021.2 

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    Event date： 2021.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：横浜国立大学   Country：Japan  

  • ３次元空間における植物葉面再構築と輪郭形状解析

    野下 浩司

    日本生態学会第68回全国大会  2021.3 

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    Event date： 2021.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：オンライン，ホスト：岡山   Country：Japan  

  • 草姿・草型の数理モデル化と高効率フェノタイピングへの応用 Invited

    野下 浩司

    農業情報学会2021年度 年次大会  2021.5 

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    Event date： 2021.5

    Language：Japanese   Presentation type：Symposium, workshop panel (public)  

    Venue：オンライン   Country：Japan  

  • 軟体動物殻形態の理論モデルによる「かたち」と「かたち作り」の定量化 Invited

    野下 浩司

    第14回バイオミネラリゼーションワークショップ  2019.11 

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    Event date： 2019.11

    Language：Japanese   Presentation type：Oral presentation (general)  

    Country：Japan  

  • 植物フェノタイピング向け仮想データセットの生成と解析

    野下 浩司

    定量生物学の会 北海道キャラバン2019  2019.11 

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    Event date： 2019.11

    Language：Japanese  

    Venue：北海道   Country：Japan  

  • A unified framework for image-based plant phenotyping under controlled growth environment: From image acquisition to phenotype interpretation International conference

    6th International Plant Phenotyping Symposium  2019.10 

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    Event date： 2019.10

    Language：English   Presentation type：Oral presentation (general)  

    Country：China  

  • Outline-based morphometrics and geometric analysis for leaf shapes in a three-dimensional space International conference

    Noshita, K., Guo, W.

    6th International Plant Phenotyping Symposium  2019.10 

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    Event date： 2019.10

    Language：English  

    Country：China  

  • 3D high through-put phenotyping for Smart agriculture Invited International conference

    Noshita, K

    International Smart Agriculture Symposium  2019.9 

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    Event date： 2019.9

    Language：English   Presentation type：Oral presentation (general)  

    Country：Japan  

  • 植物形態の計測とモデル化

    野下 浩司

    日本数理生物学会  2019.9 

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    Event date： 2019.9

    Language：Japanese   Presentation type：Symposium, workshop panel (public)  

    Venue：東京   Country：Japan  

  • 貝殻巻きパタンの定量化：”異常巻き”への拡張

    野下 浩司

    日本生態学会  2019.3 

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    Event date： 2019.6

    Language：Japanese   Presentation type：Oral presentation (general)  

    Venue：神戸   Country：Japan  

  • 3D Point Cloud Phenotyping of Soybean Growth in Early Stage International conference

    Noshita, K., Guo, W., Kaga A. and Iwata, H.

    PAG XXV  2017.1 

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    Event date： 2019.6

    Language：English  

    Country：United States  

  • An image processing pipeline for acquiring 3D morphological information from “noisy” point cloud data Invited International conference

    2017.9 

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    Event date： 2019.6

    Language：English   Presentation type：Oral presentation (general)  

    Venue：Ehime Univ.   Country：Japan  

  • 生物を通して読み解く形態と機能の関係性 Invited

    野下 浩司

    日本ロボット学会  2018.7 

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    Event date： 2019.6

    Language：Japanese   Presentation type：Public lecture, seminar, tutorial, course, or other speech  

    Country：Japan  

  • Model-based morphometrics for plant phenotyping International conference

    Noshita, K. and Guo, W.

    SMB-JSMB 2018  2018.7 

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    Event date： 2019.6

    Language：English   Presentation type：Oral presentation (general)  

    Country：Australia  

  • 野外における植物3次元形態の再構築と計測 Invited

    野下浩司，郭　　威

    電気学会 電子・情報・システム部門大会  2018.9 

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    Event date： 2019.6

    Language：Japanese  

    Country：Japan  

  • Model-based phenotyping of soybean canopies in early stage under a field condition with a photogrammetry studio International conference

    Noshita, K., Guo, W.

    IPPS2018  2018.10 

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    Event date： 2019.6

    Language：English  

    Country：Australia  

  • 3D field phenotyping of canopy development in soybean Invited International conference

    Noshita, K.

    PBIO Seminar  2018.11 

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    Event date： 2019.6

    Language：English   Presentation type：Oral presentation (general)  

    Country：United States  

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MISC

  • “かたち”のフェノーム数理解析への汎用形態記述子によるアプローチ

    野下 浩司

    生体の科学   2023.4

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    Language：Japanese   Publishing type：Article, review, commentary, editorial, etc. (scientific journal)  

    DOI： 10.11477/mf.2425201656

  • 【未病の科学】未病の数理研究　"かたち"のフェノーム数理解析への汎用形態記述子によるアプローチ

    野下 浩司

    生体の科学   74 ( 2 )   123 - 128   2023.4   （ ISSN:0370-9531 ）

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    Language：Japanese   Publisher：(公財)金原一郎記念医学医療振興財団  

    ＜文献概要＞本稿では,"かたち"のフェノーム解析に役立つであろう数理解析手法を紹介する。最初に,比較したい対象間に部位ごとの相同性を認識できる場合を想定し,幾何学的形態測定学における形状・形態の解析のための理論と方法を示す。また,比較したい対象間で相同性が認識しづらい均一な多数の構成要素から成る構造への位相的データ解析によるアプローチにも触れる。

  • Continuous and wide-raging interactions in the prehistoric Jomon hunter-gatherers of the Japanese archipelago: A geometric morphometric analysis of three dimensional data

    中尾央, 中川朋美, 金田明大, 田村光平, 野下浩司, 吉田真優

    日本進化学会大会プログラム・講演要旨集(Web)   25th   2023

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  • A Mathematical Study on Outline Morphologies of Yayoi Pottery: A Case Study Focusing on the Ongagawa-style Pottery from the Tamura, Yano, and Ayaragi-go Sites

    野下浩司, 野下浩司, 金田明大, 田村光平, 中川朋美, 中尾央

    奈文研論叢   ( 3 )   2022   （ ISSN:2435-452X ）

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  • 社会医学研究におけるAIの活用例 (研究者の最新動向)

    内田 満夫, 野下 浩司, 浅尾 高行, 小山 洋

    Precision medicine = プレシジョンメディシン   2020.5

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    Language：Japanese  

  • .植物科学の「人工知能」との関わり方を考える Reviewed

    大倉 史生, 水谷 未耶, 野下 浩司, 戸田 陽介

    植物科学の最前線   2020.1

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    Language：Japanese   Publishing type：Article, review, commentary, editorial, etc. (scientific journal)  

    DOI： 10.24480/bsj-review.11c2.00191

  • 社会医学領域において進めるAI研究

    内田 満夫, 野下 浩司, 浅尾 高行, 小山 洋

    アグリバイオ = Agricultural biotechnology   2020.1

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    Language：Japanese  

  • 社会医学領域において進めるAI研究 (研究者の最新動向)

    内田 満夫, 野下 浩司, 浅尾 高行, 小山 洋

    Precision medicine = プレシジョンメディシン   2019.11

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    Language：Japanese  

  • Topics from special edition 社会医学におけるAI研究

    内田 満夫, 野下 浩司, 渡辺 由佳子, 小山 洋

    細胞   2019.6

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    Language：Japanese  

  • 深層学習の利活用による植物表現型解析技術の展望

    大倉 史生, 野下 浩司, 木下 俊則, 戸田 陽介

    植物科学の最前線   2019.1

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    Language：Japanese  

    DOI： 10.24480/bsj-review.10b7.00160

  • 野外における作物の3次元形態の再構築 (特集 植物Phenotyping)

    野下 浩司

    アグリバイオ = Agricultural biotechnology   2018.3

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    Language：Japanese  

  • 野外における作物の3次元形態の再構築. in アグリバイオ

    野下 浩司

    2018.3

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    Language：Japanese  

  • 巻貝殻形態の理論形態学的解析パッケージ--Spiral Shell Form

    野下 浩司

    静岡大学地球科学研究報告   2010.7

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    Language：Japanese  

    DOI： 10.14945/00005294

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Works

  • ktch

    Noshita, K.

    2023.3

Professional Memberships

  • The Society for the Study of Evolution

  • PALAEONTOLOGICAL SOCIETY OF JAPAN

  • THE JAPANESE SOCIETY FOR MATHEMATICAL BIOLOGY

  • THE ECOLOGICAL SOCIETY OF JAPAN

  • JAPANESE SOCIETY OF BREEDING

  • SOCIETY OF EVOLUTIONARY STUDIES, JAPAN

  • JAPANESE SOCIETY OF AGRICULTURAL INFORMATICS

  • PALAEONTOLOGICAL SOCIETY OF JAPAN

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  • THE JAPANESE SOCIETY FOR MATHEMATICAL BIOLOGY

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  • JAPANESE SOCIETY OF AGRICULTURAL INFORMATICS

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  • SOCIETY OF EVOLUTIONARY STUDIES, JAPAN

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  • JAPANESE SOCIETY OF BREEDING

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  • THE ECOLOGICAL SOCIETY OF JAPAN

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Committee Memberships

  • Organizer   Domestic

    2023.4 - 2025.3   

  • 古生物学会   広報幹事   Domestic

    2023.4 - 2025.3   

  • Organizer   Domestic

    2021.1 - Present   

  • Organizer   Domestic

    2019.1 - Present   

Academic Activities

  • Screening of academic papers

    Role(s)： Peer review

    2023

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    Type：Peer review 

    Number of peer-reviewed articles in foreign language journals：4

  • Screening of academic papers

    Role(s)： Peer review

    2022

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    Type：Peer review 

    Number of peer-reviewed articles in foreign language journals：3

  • Screening of academic papers

    Role(s)： Peer review

    2020

    　More details

    Type：Peer review 

    Number of peer-reviewed articles in foreign language journals：4

    Number of peer-reviewed articles in Japanese journals：1

  • Screening of academic papers

    Role(s)： Peer review

    2019

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    Type：Peer review 

    Number of peer-reviewed articles in foreign language journals：7

Research Projects

  • マルチスケール計測・計算技術の融合による高スループットデバイス開発支援プラットフォーム

    2024 - 2028

    未来社会創造事業 「共通基盤領域」 本格研究

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • ヘパラン硫酸プロテオグリカンを標的とした、遺伝性脳小血管病の包括的治療方法の開発

    2024 - 2026

    日本医療研究開発機構 難治性疾患実用化研究事業

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • Prediction on infectious disease control driven SARS-CoV-2 evolution for living with COVID-19

    Grant number：23K28187  2023.4 - 2026.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant type：Scientific research funding

    CiNii Research

  • 感染症対策が駆動する新型コロナウイルスの進化予測とウィズコロナ

    Grant number：23H03497  2023 - 2025

    日本学術振興会  科学研究費助成事業  基盤研究(B)

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

  • Genetic analysis of passage cell numbers in roots: towards optimization of water use efficiency of crops

    Grant number：23K23574  2022.4 - 2025.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Grant type：Scientific research funding

    CiNii Research

  • サイバーフィジカルシステムを利用した作物強靭化による食料リスクゼロの実現

    2022 - 2025

    生物系特定産業技術研究支援センター（BRAIN）　ムーンショット型研究開発事業

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • 作物の水輸送効率の最適化に向けた根の通過細胞数の遺伝学的解析

    Grant number：22H02308  2022 - 2024

    日本学術振興会  科学研究費助成事業  基盤研究(B)

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

  • Model-based approaches to understanding the morphological diversity of plant individuals caused by the spatial periodicity of organs and their modulation

    Grant number：22H04727  2022 - 2023

    Japan Society for the Promotion of Science・Ministry of Education, Culture, Sports, Science and Technology  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

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    Authorship：Principal investigator  Grant type：Scientific research funding

    CiNii Research

  • Mathematical modeling for 3D plant morphology as fundamental technologies of plant phenotyping

    Grant number：21K14947  2021 - 2023

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Early-Career Scientists

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    Authorship：Principal investigator  Grant type：Scientific research funding

    CiNii Research

  • 大規模画像データに基づくゲノムと環境の相互作用を考慮した成長予測モデルの構築

    2021

    戦略的創造研究推進事業 (文部科学省)

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • ３次元形態計測と数理モデル化による植物フェノタイピングプラットフォームの高度化

    2021

    理研-九⼤ 科学技術ハブ共同研究 プログラム

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    Authorship：Principal investigator  Grant type：On-campus funds, funds, etc.

  • 複雑臓器制御系の数理的包括理解と超早期精密医療への挑戦

    2020 - 2025

    戦略的な研究開発の推進 ムーンショット型研究開発事業

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • Scientific reconstruction of nature in the Edo period using the Siebold collection

    Grant number：20KK0011  2020 - 2023

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Fostering Joint International Research (B)

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

    CiNii Research

  • 3D morphology of museum collection: quantification of shape recognition, improvement of accuracy, and application to exhibitions

    Grant number：20H01381  2020 - 2022

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    Sasaki Takenori

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

    It is an important task for museums to utilize accumulated specimens for scientific research and exhibition-related programs for the general public. In most research fields relevant to museums, specimen research relies on morphology. In this study, we published various case studies on specimen morphological analyses in zoology, paleontology, and archaeology, primarily using mollusk, mammal, fossil, and archaeological samples. The shape of various samples was characterized and analyzed using a combination of two- and/or three-dimensional methods. The morphological evolution of biological samples was estimated based on molecular phylogenetic analysis. The data obtained in this study were used for museum exhibitions and research on display design techniques. The results of this study were added to the museum collection database and will also be utilized for future research.

    CiNii Research

  • 「かたち」に関する数理科学基盤の構築および諸分野への社会実装

    2020 - 2022

    科学技術振興機構 未来社会創造事業

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    Authorship：Principal investigator  Grant type：Contract research

  • マルチドローン画像を用いた4D空間マッピングによる植物計測法の開発

    2020

    戦略的創造研究推進事業 (文部科学省)

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    Authorship：Coinvestigator(s)  Grant type：Contract research

  • Integrative studies of anthropological, archaeological, and cognitive evidence through a 3D database construction and mathematical analyses and modeling

    Grant number：19H05738  2019 - 2023

    Japan Society for the Promotion of Science・Ministry of Education, Culture, Sports, Science and Technology  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research on Innovative Areas (Research in a proposed research area)

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

    CiNii Research

  • 作物３D形態ベンチマークデータセットの構築による植物フェノタイピング研究の加速

    Grant number：19K15946  2019 - 2020

    日本学術振興会  科学研究費助成事業  若手研究

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    Authorship：Principal investigator  Grant type：Scientific research funding

  • 植物３次元形態データセットの作成と全体構造を記述する特徴量の開発

    2019

    九州大学　数理・データサイエンスに関する教育・研究支援プログラム

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    Authorship：Principal investigator  Grant type：On-campus funds, funds, etc.

  • Mechanisms of shell spiral growth: a primer for Paleo-Evo-Devo

    Grant number：18H01323  2018 - 2022

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    Endo Kazuyoshi

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

    In this project, we developed basic know-hows to perform genome editing using CRISPR/Cas9 in the limpet Nipponacmea fuscoviridis, and we also carried out experiments to unveil the genetic mechanisms underlying the shell spiral growth in molluscs. As a result, we successfully knocked out the lophotrochin gene which is known to be expressed in an early larval stage in the limpet. We also identified several shell matrix protein genes which are unevenly expressed between the right and left sides of the mantle, and could be related to the lateral asymmetry of the shell growth in the pond snail Lymnaea stagnalis. We further discovered that the signal transduction factor Wnt is responsible for the twisted growth of the shell during the spiral shell growth in L. stagnalis.

    CiNii Research

  • Systems Bone Biology～骨・軟骨疾患の発症予測から疾患予防へ

    Grant number：18KT0018  2018 - 2020

    日本学術振興会  科学研究費助成事業  基盤研究(B)

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    Authorship：Coinvestigator(s)  Grant type：Scientific research funding

  • マルチスケールデータ融合による草姿・草型の超解像フェノタイピング技術の開発

    2016 - 2019

    戦略的創造研究推進事業 (文部科学省)

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    Authorship：Principal investigator  Grant type：Contract research

  • 形態の適応と形成過程の数理的研究

    Grant number：12J00760  2012 - 2014

    日本学術振興会  科学研究費助成事業  特別研究員奨励費

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    Authorship：Principal investigator  Grant type：Scientific research funding

  • 形態の適応と形成過程の数理的研究

    2012 - 2014

    日本学術振興会  特別研究員

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    Authorship：Principal investigator  Grant type：Joint research

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Educational Activities

  • Computer Simulation Exercises for Biology, Biological Sciences Advanced Course 1, Synthetic Laboratory Experiments in Natural Science Basic Course, Population Ecology, Mathematical Biology, Introduction to Interdisciplinary Mathematics 1, Basic Science Experiments, Natural Science Experiments

Class subject

  • 数理生物学

    2024.4 - 2024.9   First semester

  • 数理生物学演習

    2024.4 - 2024.9   First semester

  • 数学共創概論Ⅰ

    2024.4 - 2024.9   First semester

  • 自然科学総合実験

    2024.4 - 2024.6   Spring quarter

  • 数学共創モデリング

    2023.4 - 2024.3   Full year

  • 数理生物学演習

    2023.4 - 2023.9   First semester

  • 数理生物学

    2023.4 - 2023.9   First semester

  • 数学共創概論Ⅰ

    2023.4 - 2023.9   First semester

  • 数理生物学演習

    2022.4 - 2022.9   First semester

  • 数理生物学

    2022.4 - 2022.9   First semester

  • 数学共創概論Ⅰ

    2022.4 - 2022.9   First semester

  • 数理生物学演習

    2021.4 - 2021.9   First semester

  • 数理生物学

    2021.4 - 2021.9   First semester

  • 数学共創概論Ⅰ

    2021.4 - 2021.9   First semester

  • 集団生物学

    2020.10 - 2021.3   Second semester

  • 数理生物学演習

    2020.4 - 2020.9   First semester

  • 自然科学総合実験（基礎）

    2019.10 - 2020.3   Second semester

  • 数理生物学演習

    2019.4 - 2019.9   First semester

  • 生命理学特論I

    2018.10 - 2019.3   Second semester

  • 数理生物学演習

    2018.4 - 2018.9   First semester

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FD Participation

  • 2023.3   Role：Participation   Title：【生物学科】大学発明の出願・権利化に関するFD

    Organizer：Undergraduate school department

  • 2019.10   Role：Participation   Title：科研費改革後の学術研究動向について

    Organizer：Undergraduate school department

Visiting, concurrent, or part-time lecturers at other universities, institutions, etc.

  • 2024  名古屋大学 生命理学専攻 異分野融合生物学講座 招へい教員 

  • 2024  奈良文化財研究所 埋蔵文化財センター 遺跡・調査技術研究室 客員研究員  Domestic/International Classification:Japan 

  • 2023  奈良文化財研究所 埋蔵文化財センター 遺跡・調査技術研究室 客員研究員  Domestic/International Classification:Japan 

  • 2023  名古屋大学 生命理学専攻 異分野融合生物学講座 招へい教員  Domestic/International Classification:Japan 

  • 2022  名古屋大学 生命理学専攻 異分野融合生物学講座 招へい教員  Domestic/International Classification:Japan 

  • 2022  奈良文化財研究所 埋蔵文化財センター 遺跡・調査技術研究室 客員研究員  Domestic/International Classification:Japan 

  • 2021  名古屋大学 生命理学専攻 異分野融合生物学講座 招へい教員  Domestic/International Classification:Japan 

  • 2021  奈良文化財研究所 埋蔵文化財センター 遺跡・調査技術研究室 客員研究員  Domestic/International Classification:Japan 

    Semester, Day Time or Duration：令和3（2021）年9月 -

  • 2018  Computational Plant Science Lab, UGA  Classification:Affiliate faculty  Domestic/International Classification:Overseas 

    Semester, Day Time or Duration：2018年 9月17日 - 2018年 12月11日

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Social Activities

  • スマート農業指導者養成研修

    愛知県農業試験場  2023.11

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Seminar, workshop

  • 「貝の不思議」展

    東京大学総合研究博物館  文京区教育センター 2階 大学連携事業室  2021.5

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Other

  • ボトルビルダーズ――古代アンデス、壺中のラビリンス

    東京大学総合研究博物館  東京大学総合研究博物館小石川分館／建築ミュージアム  2020.9

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Other

  • Plant Phenotyping x Engineeringアイデアソン

    国際農研，日本植物フェノタイピングネットワーク  国際農林水産業研究センター  2019.8

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Seminar, workshop

  • 植物3次元形態の取得から定量化へ：写真測量技術と点群解析 in JST/CREST Phenomics講習会「はじめてみよう・植物デジタル形質評価」

    2019.1

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Seminar, workshop

  • 貝殻形態の多様性を数理モデルで解明する in 第33回 metaPhorestセミナー AKI INOMATAx野下浩司　貝のカタチ

    2018.5

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Seminar, workshop

  • ダイズ群落の3D計測への取り組み in 公開セミナー　基礎研究で未来の『食と農業』を切り拓く

    CREST「農業ビッグデータ」  十勝さらべつ熱中小学校，北海道  2017.8

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    Audience： General,　Scientific,　Company,　Civic organization,　Governmental agency

    Type：Lecture

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Travel Abroad

  • 2018.9 - 2018.12

    Staying countory name 1：United States   Staying institution name 1：University of Georgia

  • 2014.4 - 2014.11

    Staying countory name 1：United States   Staying institution name 1：University of Pennsylvania