Updated on 2025/05/07

写真a

 
ARAI FUMIO
 
Organization
Faculty of Medical Sciences Department of Stem Cell Biology and Medicine Professor
School of Medicine Department of Medicine(Concurrent)
Graduate School of Medical Sciences Department of Medicine(Concurrent)
Graduate School of Medical Sciences Department of Health Care Administration and Management(Concurrent)
Title
Professor
Homepage

Research Areas

  • Life Science / Hematology and medical oncology

Degree

  • D.D.S.

  • Ph.D.

Research History

  • なし   

    なし

  • 慶應義塾大学 (専任講師)   

Education

  • Meikai University   大学院歯学研究科   歯学専攻博士課程

    1996.4 - 2000.3

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    Country:Japan

  • Meikai University   歯学部   歯学科

    1990.4 - 1996.3

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    Country:Japan

Research Interests・Research Keywords

  • Research theme: Functional regulation of the hematopoietic niche

    Keyword: Mesenchymal stem cell

    Research period: 2023.4

  • Research theme: Regulation of stem cell aging

    Keyword: Shelterin

    Research period: 2014.4

  • Research theme: Elucidation of the molecular mechanism of asymmetric cell division of hematopoietic stem cells

    Keyword: Asymmetric cell division

    Research period: 2014.4

  • Research theme: Elucidation of the molecular mechanism that regulates the self-renewal activity of hematopoietic stem cells

    Keyword: hematopoietic stem cells, niche, asymmetric/symmetric cell divisions

    Research period: 2011.4 - 2017.3

Awards

  • エルウィン・フォン・ベルツ賞

    2004  

Papers

  • Loss of endothelial membrane KIT Ligand affects systemic KIT ligand levels but not bone marrow hematopoietic stem cells. International journal

    Sahoko Matsuoka, Raffaella Facchini, Tiago C Luis, Joana Carrelha, Petter S Woll, Takuo Mizukami, Bishan Wu, Hanane Boukarabila, Mario Buono, Ruggiero Norfo, Fumio Arai, Toshio Suda, Adam Mead, Claus Nerlov, Sten Eirik W Jacobsen

    Blood   142 ( 19 )   1622 - 1632   2023.11   ISSN:0006-4971 eISSN:1528-0020

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Blood  

    A critical regulatory role of hematopoietic stem cell vascular niches in the bone marrow has been implicated to occur through endothelial niche cell expression of KIT Ligand. However, endothelial-derived KIT Ligand is expressed in both a soluble and membrane-bound form, and not unique to bone marrow niches and is also systemically distributed through the circulatory system. Here we confirm that upon deletion of both the soluble and membrane-bound form of endothelial-derived KIT Ligand hematopoietic stem cells are reduced in mouse bone marrow. However, deletion of endothelial-derived KIT Ligand was also accompanied by reduced soluble KIT Ligand levels in blood, precluding any conclusion as to whether the reduction in HSC numbers reflect reduced endothelial expression of KIT Ligand within HSC niches, elsewhere in the bone marrow and/or systemic sKIT Ligand produced by endothelial cells outside of the bone marrow. Notably, endothelial deletion specifically of the membrane bound form of KIT Ligand also reduced systemic levels of soluble KIT Ligand although with no effect on stem cell numbers, implicating a hematopoietic stem cell regulatory role primarily of soluble rather than membrane KIT Ligand expression in endothelial cells. In support of a role of systemic rather than local niche expression of soluble KIT Ligand, hematopoietic stem cells were unaffected in bones with deletion of KIT ligand when implanted in mice with normal systemic levels of soluble KIT Ligand. Our findings highlight the need for more specific tools to unravel niche-specific roles of regulatory cues expressed in hematopoietic niche cells in the bone marrow.

    DOI: 10.1182/blood.2022019018

    Web of Science

    Scopus

    PubMed

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  • Modeling Stem Cell Fates using Non-Markov Processes. Reviewed International journal

    Patrick S Stumpf, Fumio Arai, Ben D MacArthur

    Cell stem cell   28 ( 2 )   187 - 190   2021.2

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    Language:English   Publishing type:Research paper (scientific journal)  

    Epigenetic memories play an important part in regulating stem cell identities. Tools from the theory of non-Markov processes may help us understand these memories better and develop a more integrated view of stem cell fate and function.

    DOI: 10.1016/j.stem.2021.01.009

  • Transfer learning efficiently maps bone marrow cell types from mouse to human using single-cell RNA sequencing. Reviewed International journal

    Patrick S Stumpf, Xin Du, Haruka Imanishi, Yuya Kunisaki, Yuichiro Semba, Timothy Noble, Rosanna C G Smith, Matthew Rose-Zerili, Jonathan J West, Richard O C Oreffo, Katayoun Farrahi, Mahesan Niranjan, Koichi Akashi, Fumio Arai, Ben D MacArthur

    Communications biology   3 ( 1 )   736 - 736   2020.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    Biomedical research often involves conducting experiments on model organisms in the anticipation that the biology learnt will transfer to humans. Previous comparative studies of mouse and human tissues were limited by the use of bulk-cell material. Here we show that transfer learning-the branch of machine learning that concerns passing information from one domain to another-can be used to efficiently map bone marrow biology between species, using data obtained from single-cell RNA sequencing. We first trained a multiclass logistic regression model to recognize different cell types in mouse bone marrow achieving equivalent performance to more complex artificial neural networks. Furthermore, it was able to identify individual human bone marrow cells with 83% overall accuracy. However, some human cell types were not easily identified, indicating important differences in biology. When re-training the mouse classifier using data from human, less than 10 human cells of a given type were needed to accurately learn its representation. In some cases, human cell identities could be inferred directly from the mouse classifier via zero-shot learning. These results show how simple machine learning models can be used to reconstruct complex biology from limited data, with broad implications for biomedical research.

    DOI: 10.1038/s42003-020-01463-6

  • Machine Learning of Hematopoietic Stem Cell Divisions from Paired Daughter Cell Expression Profiles Reveals Effects of Aging on Self-Renewal. Reviewed International journal

    Fumio Arai, Patrick S Stumpf, Yoshiko M Ikushima, Kentaro Hosokawa, Aline Roch, Matthias P Lutolf, Toshio Suda, Ben D MacArthur

    Cell systems   11 ( 6 )   640 - 652   2020.12

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    Language:English   Publishing type:Research paper (scientific journal)  

    Changes in stem cell activity may underpin aging. However, these changes are not completely understood. Here, we combined single-cell profiling with machine learning and in vivo functional studies to explore how hematopoietic stem cell (HSC) divisions patterns evolve with age. We first trained an artificial neural network (ANN) to accurately identify cell types in the hematopoietic hierarchy and predict their age from single-cell gene-expression patterns. We then used this ANN to compare identities of daughter cells immediately after HSC divisions and found that the self-renewal ability of individual HSCs declines with age. Furthermore, while HSC cell divisions are deterministic and intrinsically regulated in young and old age, they are variable and niche sensitive in mid-life. These results indicate that the balance between intrinsic and extrinsic regulation of stem cell activity alters substantially with age and help explain why stem cell numbers increase through life, yet regenerative potency declines.

    DOI: 10.1016/j.cels.2020.11.004

  • The telomere binding protein Pot1 maintains haematopoietic stem cell activity with age. Reviewed International journal

    Kentaro Hosokawa, Ben D. MacArthur, Yoshiko Matsumoto Ikushima, Hirofumi Toyama, Yoshikazu Masuhiro, Shigemasa Hanazawa, Toshio Suda, Fumio Arai

    Nature Communications   8 ( 1 )   2017.10

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    Language:English   Publishing type:Research paper (scientific journal)  

    Repeated cell divisions and aging impair stem cell function. However, the mechanisms by which this occurs are not fully understood. Here we show that protection of telomeres 1A (Pot1a), a component of the Shelterin complex that protects telomeres, improves haematopoietic stem cell (HSC) activity during aging. Pot1a is highly expressed in young HSCs, but
    declines with age. In mouse HSCs, Pot1a knockdown increases DNA damage response (DDR) and inhibits self-renewal. Conversely, Pot1a overexpression or treatment with POT1a protein prevents DDR, maintained self-renewal activity and rejuvenated aged HSCs upon ex vivo culture. Moreover, treatment of HSCs with exogenous Pot1a inhibits the production of reactive oxygen species, suggesting a non-telomeric role for Pot1a in HSC maintenance. Consistent with these results, treatment with exogenous human POT1 protein maintains human HSC activity in culture. Collectively, these results show that Pot1a/POT1 sustains HSC activity and can be used to expand HSC numbers ex vivo.

    DOI: 10.1038/s41467-017-00935-4

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Presentations

  • Function of Pot1 in the maintenance of hematopoietic stem cell activity under stress Invited International conference

    Fumio Arai

    5th International Conference on Tissue Engineering & Regenerative Medicine  2016.9 

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    Event date: 2016.9

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Berlin   Country:Germany  

  • Pot1 maintains hematopoietic stem cell activity under stress Invited International conference

    Fumio Arai

    Japan Society for the Promotion of Science and National University of Singapore joint symposium  2016.1 

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    Event date: 2016.1

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Singapore   Country:Singapore  

  • Introduction of hematopoietic stem cell niche Invited International conference

    Fumio Arai

    ISEH 44th Annual Scientific Meeting  2015.9 

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    Event date: 2015.9

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Kyoto   Country:Japan  

  • Pot1a regulates self-renewal activity of hematopoietic stem cells Invited International conference

    Fumio Arai

    4th International Conference on Tissue Engineering & Regenerative Medicine  2015.7 

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    Event date: 2015.7

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Rome   Country:Italy  

  • Role of Pot1 in the regulation of hematopoietic stem cell activity Invited International conference

    Fumio Arai

    2015 US-Japan Meeting on Malignant Hematopoiesis and Stem Cells  2015.3 

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    Event date: 2015.3

    Language:English   Presentation type:Oral presentation (general)  

    Venue:Waikoloa, HI   Country:United States  

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MISC

  • Niche regulation of hematopoietic stem cells in the endosteum Invited Reviewed

    Fumio Arai, Hiroki Yoshihara, Hosokawa Kentaro, Yuka Nakamura, Yumiko Gomei, Hiroko Iwasaki, Toshio Suda

    Ann N Y Acad Sci   1176   36 - 46   2009.10   ISSN:1749-6632

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Article, review, commentary, editorial, etc. (scientific journal)  

    During postnatal life, the bone marrow (BM) supports both the self-renewal and differentiation of hematopoietic stem cells (HSCs) in specialized niches. The interaction of HSCs with their niches also regulates the quiescence of HSCs. HSC quiescence is critical to ensure lifelong hematopoiesis and to protect the HSC pool from myelotoxic insult and premature exhaustion under conditions of hematopoietic stress. Here we identified long-term (LT)-HSCs expressing the thrombopoietin (THPO) receptor, Mp1, as a quiescent population in adult BM. THPO was produced by bone-lining cells in the endosteum. Inhibition and stimulation of the THPO/Mp1 pathway produced opposite effects on the quiescence of LT-HSC. Exogenous THPO transiently increased the quiescent LT-HSC population, such as side-population and pyronin Y-negative cells. In contrast, administration of an anti-Mp1 neutralizing antibody, AMM2, suppressed the quiescence of LT-HSCs and enabled HSC engraftment without irradiation, indicating that inhibition of THPO/Mp1 signaling reduces HSC-niche interactions. Moreover, it suggests that inhibiting the HSC-niche interaction could represent a novel technique for bone marrow transplantation without irradiation. Altogether, these data suggest that the THPO/Mp1 signaling pathway is a novel niche component in the endosteum, and in the steady-state condition, this signaling pathway plays a critical role in the regulation of LT-HSCs in the osteoblastic niche.

    DOI: 10.1111/j.1749-6632.2009.04561.x

  • 【老化と血液細胞】Pot1a導入による造血幹細胞の老化制御と機能回復

    新井 文用

    血液内科   87 ( 3 )   290 - 295   2023.9   ISSN:2185-582X

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    Language:Japanese   Publisher:(有)科学評論社  

  • 造血幹細胞の老化制御に対するテロメア結合因子Pot1aの機能解析

    細川 健太郎, Ben D MACARTHUR, 生島 芳子, 外山 弘文, 舛廣 善和, 花澤 重正, 須田 年生, 新井 文用

    臨床血液   2017.9

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    Language:Japanese  

    Functional analysis of Protection of Telomeres 1a (Pot1a) in regulation of hematopoietic stem cell aging
    <p>Repeated cell divisions induce DNA damage accumulation, which impairs stem cell function during aging. However, the general molecular mechanisms by which this occurs remain unclear. Herein, we show that the expression of protection of telomeres 1a (Pot1a), a component of shelterin, is crucial for prevention of telomeric DNA damage response (DDR) and maintenance of hematopoietic stem cell (HSC) activity during aging. We observed that HSCs express high levels of Pot1a during development, and this expression declines with aging. Knockdown of Pot1a induced an age-related phenotype, characterized by increased telomeric DDR and reduced long-term reconstitution activity. In contrast, treatment with exogenous Pot1a protein prevented telomeric DDR, which decreased stem cell activity and partially rejuvenated HSC activity. These results highlight a general, reversible mechanism by which aging compromises mammalian stem cell activity, with widespread implications for regenerative medicine.</p>

    DOI: 10.11406/rinketsu.58.942

  • 白血病幹細胞とニッチ (特集 白血病発症の分子生物学)

    新井 文用

    血液内科 = Hematology   2016.12

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    Language:Japanese  

    Leukemic stem cells and their niche regulation

  • 幹細胞研究における一細胞解析 (AYUMI 一細胞遺伝子解析)

    新井 文用

    医学のあゆみ   2016.7

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    Language:Japanese  

    Single cell analysis for stem cell research

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Professional Memberships

  • European Hematology Association

  • The Japanese Society of Hematology

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  • Stem Cell Research Symposium

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  • International Society for Stem Cell Research

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  • International Society for Experimental Hematology

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Committee Memberships

  • 日本血液学会   Councilor   Domestic

    2019.10 - 2021.9   

  • 幹細胞シンポジウム   幹事  

    2017.5   

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Academic Activities

  • Screening of academic papers

    Role(s): Peer review

    2024

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    Type:Peer review 

    Number of peer-reviewed articles in foreign language journals:1

  • Screening of academic papers

    Role(s): Peer review

    2021

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    Type:Peer review 

    Number of peer-reviewed articles in foreign language journals:1

  • その他

    第16回幹細胞シンポジウム  ( Japan ) 2018.6

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    Type:Competition, symposium, etc. 

    Number of participants:130

  • その他

    第76回日本血液学会学術集会  ( Japan ) 2014.10 - 2014.11

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    Type:Competition, symposium, etc. 

  • その他

    第12回幹細胞シンポジウム  ( Japan ) 2014.5

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    Type:Competition, symposium, etc. 

    Number of participants:500

Research Projects

  • Overcoming T cell dysfunction with Shelterin factor

    Grant number:23K18301  2023.6 - 2025.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Challenging Research (Exploratory)

    新井 文用

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    Grant type:Scientific research funding

    Tリンパ球はがん免疫療法(遺伝子改変T細胞療法など)の主要な細胞ソースであるが、遺伝子導入操作や老化によって生じる機能低下を克服することが、高い治療効果を得る上での重要な課題となっている。我々は、シェルタリン因子POT1aを導入することで老化造血幹細胞からのリンパ球産生が回復することを見出した。そこで本研究では、POT1をはじめとしたシェルタリン因子の機能を応用することで、Tリンパ球の機能低下抑制および機能回復に挑戦する。本研究の成果は、CAR-T治療におけるTリンパ球の機能低下の阻止や疲弊Tリンパ球の機能回復による抗腫瘍効果の増強を可能にし、これにより新たながん免疫療法の開発につながると期待できる。

    CiNii Research

  • Function of telomere binding factors in normal and tumor hematopoietic microenvironments

    Grant number:23K07861  2023.4 - 2026.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    細川 健太郎, 新井 文用

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    Grant type:Scientific research funding

    本研究では、正常造血や白血病病態におけるニッチ機構の解明を目的とし、テロメア結合因子Pot1の機能を明らかにすることで、AML支持因子の同定を行う。Pot1が転写因子として機能することに着目し、AML支持因子の標的候補を特定することを目的とする。同定された標的に対する阻害剤探索や開発を通じ、AML支持機構の破壊を主軸とした新規治療法の確立に繋がることが期待される。

    CiNii Research

  • Elucidation of the mechanism of hematopoietic stem cell maintenance by newly identified bone marrow mesenchymal stem cells.

    Grant number:23K27626  2023.4 - 2026.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    新井 文用, 細川 健太郎, 八尾 尚幸

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    Grant type:Scientific research funding

    骨内膜領域に存在するALCAM+Itga8+ 細胞が多能性と造血支持能を持つMSCであることを見出した。本研究では、新たに同定されたMSCと他のMSC分画との関係性を理解することで、MSCの機能的階層性を明らかにする。また、ALCAM+Itga8+ MSCによるHSCの維持機構を解明する。さらに、転移学習を駆使して、ALCAM+Itga8+ MSCに相当するヒトMSCの同定に挑戦する。本研究の成果は、造血制御機構の解明だけでなく、HSCの機能低下の防止、さらには機能回復にも応用できると考える。また、治療に効果的なMSCを同定することで、移植治療や再生医療の発展に貢献することが期待される。

    CiNii Research

  • 新たに同定した骨髄間葉系幹細胞による造血幹細胞の維持機構の解明

    Grant number:23H02935  2023 - 2025

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

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    Authorship:Principal investigator  Grant type:Scientific research funding

  • Identification of transcriptional signaling networks that control the quality and quantity of the bone marrow microenvironment

    Grant number:20K08733  2020.4 - 2023.3

    Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    Hosokawa Kentaro

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    Grant type:Scientific research funding

    In this study, we aimed to clarify the function of the forkhead transcription factor Foxp2 on hematopoietic support and self-renewal in bone marrow mesenchymal stem cells (MSCs), and analyzed MSC-specific Foxp2-deficient mice. We found that MSCs exhibit decreased self-renewal capacity and decreased expression of hematopoietic supporting factors. Furthermore, we found that the effects of Foxp2 deficiency on the cell cycle and metabolism of hematopoietic stem cells (HSCs) resulted in a decrease in self-renewal capacity and bone marrow remodeling capacity.

    CiNii Research

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Educational Activities

  • 応用幹細胞学講義
    細胞生物学講義

Class subject

  • 細胞生物学

    2025.4 - Present  

  • 生命の科学A

    2021.4 - 2021.9   First semester

  • 基礎生物学講義

    2020.4 - 2020.9   First semester

  • 応用幹細胞学講義

    2020.4 - 2020.9   First semester

  • 応用幹細胞学

    2019.10 - 2020.3   Second semester

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FD Participation

  • 2024.3   Role:Panelist   Title:九州大学医学部・医学系学府合同教育FD

    Organizer:[Undergraduate school/graduate school/graduate faculty]

  • 2017.12   Title:大学院FD

  • 2017.6   Title:医学科・生命科学科FD

  • 2016.12   Title:大学院FD

  • 2016.10   Title:馬出地区キャンパスFD

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Acceptance of Foreign Researchers, etc.

  • Acceptance period: 2020.6 - 2021.3  

    Nationality:Viet Nam

Travel Abroad

  • 2023.6

    Staying countory name 1:United Kingdom   Staying institution name 1:University of Southampton