Updated on 2026/06/16

Information

 

写真a

 
MURAKAMI YUSUKE
 
Organization
Faculty of Science Department of Chemistry Assistant Professor
Graduate School of Sciences Department of Chemistry(Concurrent)
School of Sciences Department of Chemistry(Concurrent)
Title
Assistant Professor
External link

Research Areas

  • Life Science / Biomedical engineering

Degree

  • 博士(医学) ( 2026.3 University of Tsukuba )

Research History

  • Kyushu University  Assistant Professor 

    2026.4 - Present

Education

  • University of Tsukuba   グローバル教育院  

    2021.4 - 2026.3

Research Interests・Research Keywords

  • Research theme: I develop optical technologies to elucidate biological phenomena. Specifically, I am developing highly sensitive molecular imaging techniques based on physical chemistry to visualize molecules in the mouse brain, which is essential for advancing our understanding of neuroscience.

    Keyword: 非線形光学、振動分光学、神経科学、バイオイメージング

    Research period: 2026.4 - Present

Awards

  • 日本分光学会年次講演会若手講演賞

    2026.6   日本分光学会  

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    Award type:Award from Japanese society, conference, symposium, etc. 

  • コニカミノルタ光みらい若手奨励金

    2025.10   日本光学会  

  • The 8th Taiwan International Symposium on Raman Spectroscopy (TISRS 2023) Best Poster Award

    2023.6  

Papers

  • Chromatic aberration compensation in multiplex coherent Raman microscopy using a Bessel beam Reviewed

    Ryosuke Oketani, Kyosuke Tanaka, Yusuke Murakami, Hideaki Kano

    Optics letters   2025.10

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    Language:English   Publishing type:Research paper (scientific journal)  

  • Near-Infrared Coumarin-Hemicyanine Hybrid Dyes Bearing an Intramolecular Nucleophile for Activatable Fluorescence and Raman Imaging. Reviewed

    Hiroyoshi Fujioka, Ryo Sakamoto, Kotaro Hiramatsu, Yusuke Murakami, Minori Masaki, Minoru Kawatani, Satoshi Matsumoto, Ryosuke Kojima, Yasuteru Urano, Hideaki Kano, Mako Kamiya

    Analytical Chemistry   2025.8

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    Language:English   Publishing type:Research paper (scientific journal)  

  • A ferroelectric proton conductor with colossal polarization induced by in-plane symmetry breaking in a two-dimensional coordination polymer. Reviewed International coauthorship

    Yanqing Song, Yuta Tsuji, Kunihisa Sugimoto, Takashi Kikuchi, Yuxin Shi, Yusuke Murakami, Kotaro Hiramatsu, Benjamin Le Ouay, Masaaki Ohba, Ryo Ohtani

    Chemical science   2025.7

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    Language:English  

  • Seamless Tiling and Scalable Coherent Raman Spectroscopic Analysis Reveals Developmental Maturation of Lipids in the Mouse Brain. Reviewed International coauthorship

    Minori Masaki, Yusuke Murakami, Zuliang Hu, Ting-Hao Chen, Philippe Leproux, Masashi Yanagisawa, Hideaki Kano

    Analytical Chemistry   2025.7

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

    Lipids constitute approximately half of the dry weight of the brain and play a crucial role in the rapid conduction of action potentials and neurotransmission. However, the maturation of the lipid composition underlying complex brain functions matures during development remains unclear. We developed a sensitive coherent Raman spectroscopic imaging system in which the laser beam is always aligned with the optical axis of the microscope. This system enables seamless stitching-free imaging with a scalable field-of-view and broadband wavelength coverage. Using this unique combination system, we analyzed temporal and spatial changes in lipid composition from the fetal stage to adulthood across mouse brain regions. Our findings revealed that regions with a high total lipid ratio gradually expanded throughout the brain during size growth. While the total lipid ratio continuously increased, changes in lipid composition, particularly ceramide accumulation, were observed in the fiber regions during periods of increasing axonal myelination. High-resolution coherent Raman imaging of the fetal brain revealed that radial glial cells (the most undifferentiated cells) exhibited a higher total lipid ratio than the more differentiated cells. These results can be detected using this system and provide fundamental insights into lipid maturation across different brain regions and developmental stages.

  • Label-Free Visualization of Ciliary Rootlets in Mouse Brain. Reviewed

    Yusuke Murakami, Mutsuo Nuriya, Zuliang Hu, Masaki Tomioka, Ryosuke Oketani, Kotaro Hiramatsu, Philippe Leproux, Akihito Inoko, Sakiko Honjoh, Hideaki Kano

    Analytical Chemistry   2025.7

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    Authorship:Lead author, Corresponding author   Language:English   Publishing type:Research paper (scientific journal)  

    Neuronal primary cilia play important roles in brain development, sensory perception, and neurogenesis. Rootletin, a fibrous protein composed of coiled-coil motifs, is a key structural component of ciliary rootlets and is essential for understanding ciliary functions. However, the precise mechanisms by which Rootletin influences ciliary dynamics and impacts neuronal function remain largely unknown, primarily due to the challenges associated with visualizing these structures. In this study, we present a label-free, rapid, and highly sensitive method for visualizing Rootletin molecules in brain tissue. This platform integrates a second harmonic generation (SHG) microscope with background reduction by a one-step chemical pretreatment. Additionally, we employed coherent anti-Stokes Raman scattering imaging to simultaneously determine the cellular regions and intracellular locations of SHG signals. Applying this multimodal multiphoton imaging approach to the mouse hippocampus revealed that neuronal ciliary rootlets exhibited highly organized and specific intracellular distributions. Moreover, measurements of cultured neurons revealed that ciliary rootlets were detected even in immature neurons. These findings highlight the utility of our label-free imaging platform in developmental and neuroscience research, providing a powerful tool for characterizing ciliary dynamics and neuronal function.

  • Exploring liquid–liquid phase separation in vitro and in vivo using multimodal nonlinear optical imaging Reviewed International coauthorship

    Yusuke Murakami, Mia Obuchi, Hiroshi Kamizawa, Shinichi Miyazaki, Akihiro Kishimura, Ryosuke Oketani, Kotaro Hiramatsu, Philippe Leproux, Yu Hayashi, Kentaro Shiraki, Hideaki Kano

    Analytical Science   2025.3

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

  • Molecular Fingerprinting of Mouse Brain Using Ultrabroadband Coherent Anti-Stokes Raman Scattering (CARS) Microspectroscopy Empowered by Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS). Reviewed International coauthorship

    Yusuke Murakami, Masahiro Ando, Ayako Imamura, Ryosuke Oketani, Philippe Leproux, Sakiko Honjoh, Hideaki Kano

    Chemical & biomedical imaging   2024.10

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

  • Backward multiplex coherent anti-Stokes Raman (CARS) spectroscopic imaging with electron-multiplying CCD (EM-CCD) camera Reviewed International coauthorship

    Yusuke Murakami, Minami Yoshimura, WJ Niels Klement, Atsuki Oda, Ryo Sakamoto, Miho Yakabe, Atsushi Matsumoto, Ryosuke Oketani, Philippe Leproux, Junichi Ikenouchi, Wesley R Browne, Hideaki Kano

    Optics Continuum   2023.9

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

  • Opalescence arising from network assembly in antibody solution Reviewed

    Yoshitaka Nakauchi, Suguru Nishinami, Yusuke Murakami, Toshihiko Ogura, Hideaki Kano, Kentaro Shiraki

    Molecular pharmaceutics   2022.3

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    Language:English   Publishing type:Research paper (scientific journal)  

  • Spectroscopic second and third harmonic generation microscopy using a femtosecond laser source in the third near-infrared (NIR-III) optical window. Reviewed

    Yusuke Murakami, Minori Masaki, Shinichi Miyazaki, Ryosuke Oketani, Yu Hayashi, Masashi Yanagisawa, Sakiko Honjoh, Hideaki Kano

    Biomedical optics express   2022.2

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)  

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Books

  • Coherent Anti-Stokes Raman Scattering (CARS) Microscopy and its Applications in Life Sciences

    Shinichi Miyazaki, Yusuke Murakami, Sakiko Honjoh, Yu Hayashi, Hideaki Kano(Role:Joint author)

    Taylor and Francis 

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    Language:English   Book type:Textbook, survey, introduction

Presentations

  • Toward label-free molecular imaging of whole brain and brain cells using ultra-broadband multiplex CARS microspectroscopy

    第99 回日本生理学会大会 特別国際シンポジウム JST-CREST Opt Bio”/WPI-IIIS Joint Symposium  2022.3 

  • Toward Whole Brain Label-free Molecular Imaging with Single-cell Resolution Using Ultra-broadband Multiplex CARS Microspectroscopy

    2022.2  SPIE

  • Nonlinear optical imaging of biological tissues using a 1.55 μm femtosecond laser source

    Tsukuba conference  2021.9 

  • 広帯域電子共鳴CARS/CSRS顕微分光法の開発

    2026.6  日本分光学会

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    Venue:福井  

  • Molecular Identification of Second harmonic generation (SHG) sources in Mouse brain by Multimodal imaging with ultra-broadband multiplex coherent anti Stokes Raman scattering (CARS)

    2023  SPIE

  • Label-free Sub-cellular Imaging of Mouse Brain using Multiplex CARS and SHG Microspectroscopy”,

    8th Asian Spectroscopy Conference  2023.9 

  • Multimodal imaging of whole mouse brain using Ultra-broadband multiplex coherent anti-Stokes Raman scattering (CARS) and second harmonic generation (SHG)

    The 8th Taiwan International Symposium on Raman Spectroscopy (TISRS 2023)  2023.6 

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Research Projects

  • 新規in vivo非線形ラマン分光イメージング法の開発による睡眠制御機構の解明

    Grant number:23KJ0267  2023.4 - 2026.3

    日本学術振興会  科学研究費助成事業  

Educational Activities

  • 分野の垣根を越えて、多様な知識や技術を柔軟に組み合わせられる人材の育成に力を入れています。特に、光を利用して、これまで目で捉えることのできなかった生命現象や生体分子を可視化する技術の開発を教育に取り入れています。学生が光学、化学、生物学などの幅広い分野を横断的に学び、得られた画像や分光情報から、生物の構造や機能を分子・化学的な視点で理解できる力を養うことを目指しています。また、装置の構築から試料の観察、データ解析、結果の考察までを一貫して経験することで、自ら課題を発見し、異なる分野の知識を活用しながら解決策を考えられる実践的な研究能力を育成します。