Kyushu University Academic Staff Educational and Research Activities Database
List of Presentations
Fumiko Matsuzaki Last modified date:2020.08.11

Assistant Professor / Research Center for Transomics Medicine / Medical Institute of Bioregulation


Presentations
1. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Tomoyoshi Soga, Kazumitsu Maehara, Yasuyuki Ohkawa, Keiichi I. Nakayama, Shinya Kuroda, Hiroyuki Kubota, Integrated analysis through multiple molecular layers: transomic network dynamics, The 29th Hot Spring Harbor International Symposium, 2020.02.
2. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Tomoyoshi Soga, Kazumitsu Maehara, Yasuyuki Ohkawa, Keiichi I. Nakayama, Shinya Kuroda, Hiroyuki Kubota, Time Series Transomics: Integrated analysis through multiple molecular layers, The 20th International Conference on Systems Biology, 2019.11.
3. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Hiroyuki Kubota, Time Series Transomics: Integrated analysis through multiple molecular layers, 2nd Diversity Symposium, 2019.03.
4. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Masaki Matsumoto, Keiichi I. Nakayama, Hiroyuki Kubota, Time Series Transomics: Integrated analysis through multiple molecular layers, 1st International symposium on interdisciplinary approaches to integrative understanding of biological signaling networks, 2019.02.
5. Osamu Maruyama, Fumiko Matsuzaki, [Regular Paper] DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites, 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE), 2018.12, In this paper, we address the problem of finding sequence motifs in substrate proteins specific to E3 ubiquitin ligases (E3s). We formulated a posterior probability distribution of sites by designing a likelihood function based on amino acid indexing and a prior distribution based on the disorderness of protein sequences. These designs are derived from known characteristics of E3 binding sites in substrate proteins. Then, we devise a collapsed Gibbs sampling algorithm for the posterior probability distribution called DegSampler. We performed computational experiments using 36 sets of substrate proteins specific to E3s and compared the performance of DegSampler with those of popular motif finders, MEME and GLAM2. The results showed that DegSampler was superior to the others in finding E3 binding motifs. Thus, DegSampler is a promising tool for finding E3 motifs in substrate proteins..
6. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Hiroyuki Kubota, TRANSOMICS: Integrated Analysis Through Multiple Molecular Layers, The 19th International Conference on Systems Biology, 2018.10.
7. Fumiko Matsuzaki, Shinsuke Uda, Yukiyo Yamauchi, Kazumitsu Maehara, Yasuyuki Ohkawa, Masaki Matsumoto, Keiichi I. Nakayama, Hiroyuki Kubota, TRANSOMICS: Integrated Analysis Through Multiple Molecular Layers, The Joint Symposium of the 13th International Symposium of the Institute Network for Biomedical Sciences and the 28th Hot Spring Harbor International Symposium 2018, 2018.10.
8. Fumiko Matsuzaki, Masaki Matsumoto, Kiyotaka Oshikawa, Fumihide Shiraishi, Keiichi Nakayama, Absolute quantification of all human metabolic enzymes and metabolic systems analysis, International Symposium on Synthetic Systems Biology, 2015.09.
9. Fumiko Matsuzaki, Masaki Matsumoto, Kiyotaka Oshikawa, Keiichi Nakayama, Absolute quantification of all human metabolic enzymes and metabolic systems analysis, First symposium: From genes to human diseases, 2015.03.
10. Fumiko Matsuzaki, Masaki Matsumoto, Kiyotaka Oshikawa, Keiichi Nakayama, Absolute quantification of all human metabolic enzymes and metabolic systems analysis, The Third BMIRC International Symposium for Virtual Physiological Human, 2015.03.
11. Fumiko Matsuzaki, Masaki Matsumoto, Kiyotaka Oshikawa, Keiichi Nakayama, Absolute quantification of all human metabolic enzymes and metabolic systems analysis, The 37th annual meeting of the molecular biology society of Japan, 2014.11.
12. Fumiko Matsuzaki, Absolute quantification of all metabolic enzymes by information-based proteomics and computational analysis for cancer metabolism, 2014.09.
13. Fumiko Matsuzaki, Masaki Matsumoto, Kiyotaka Oshikawa, Keiichi Nakayama, Absolute quantification of all metabolic enzymes by information-based proteomics and computational analysis for cancer metabolism, Symposium on complex biodynamics and networks, 2013.11.
14. Masaki Matsumoto, Fumiko Matsuzaki, Kiyotaka Oshikawa, Koji Oyamada, Naoki Goshima, Tohru Natsume, Keiichi Nakayama, Accurate and absolute quantification of human proteome by large-scale targeted proteomics, The 85th Annual Meeting of the Japanese Biochemical Society, 2012.12.
15. Fumiko Matsuzaki, Michiko Shirane, Masaki Matsumoto, Keiichi Nakayama, Protrudin is a novel adaptor protein of KIF5 and regulates neuronal function, 6th young investigators forum, 2011.02.
16. Fumiko Matsuzaki, Michiko Shirane, Masaki Matsumoto, Keiichi Nakayama, Identification of components in the complex with protrudin and elucidation of their roles in neuronal function, The Joint Symposium of the 5th International Symposium of Institute Network and the International Symposium Commemorating Inauguration of Kanazawa University Cancer Research Institute, 2010.06.
17. Motoyuki Shimizu, Fumiko Matsuzaki, Shinji Hirosue, Akira Arisawa, Hiroshi Tsunekawa, Hiroyuki Wariishi, Proteome of the White-rot Basidiomycete Phanerochaete chrysosporium grown in Cellulose Medium, The annual meeting of the Society for Industrial Microbiology, 2006.08.
18. Motoyuki Shimizu, Fumiko Matsuzaki, Shinji Hirosue, Akira Arisawa, Hiroshi Tsunekawa, Hiroyuki Wariishi, Molecular characterization of a fused protein of P450 and P450 reductase PcCYP17a from the white-rot fungus Phanerochaete chrysosporium, International Symposium on Wood Science and Technologies; 50th Anniversary of The Japan Wood Research Society, 2005.11.
19. Motoyuki Shimizu, Fumiko Matsuzaki, Naoki Yuda, Hiroyuki Wariishi, A proteomic differential display analysis of Phanerochaete chrysosporium against sulfur depletion, 1st International Fungal Proteomics Symposium, 2004.10.
20. Fumiko Matsuzaki, Hiroyuki Wariishi, Functional Diversity of Cytochrome P450 derived Metabolic Reactions in the White-rot Fungus Phanerochaete chrysosporium., 7th International Symposium on Cytochrome P450 Biodiversity and Biotechnology, 2004.08.