Kyushu University Academic Staff Educational and Research Activities Database
List of Papers
Matsumi Rie Last modified date:2019.04.08

Post-doctoral Fellow / Division of Oral Health, Growth and Development, Section of Preventive and Public Health Dentistry / Department of Bioscience and Biotechnology / Faculty of Agriculture


Papers
1. Gehring, AM., Astling, DP., Matsumi, R., Burkhart, BW., Kelman, Z., Reeve, JN., Jones, KL., Santangelo, TJ., Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication, FRONTIERS IN MICROBIOLOGY, 2017.10.
2. Matsumi, R., Hellriegel, C., Schoenenberger, B., Milesi, T., van der Oost, J., Wohlgemuth, R., Biocatalytic asymmetric phosphorylation of mevalonate, RSC ADVANCES, 10.1039/c4ra01299b, 4, 25, 12989-12994, 2014.02.
3. Tominaga, T., Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K., Crystal structures of the carbamoylated and cyanated forms of HypE for [NiFe] hydrogenase maturation, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 10.1073/pnas.1313620110, 110, 51, 20485-20490, 2013.12.
4. Sasaki, D., Watanabe, S., Matsumi, R., Shoji, T., Yasukochi, A., Tagashira, K., Fukuda, W., Kanai, T., Atomi, H., Imanaka, T., Miki, K., Identification and Structure of a Novel Archaeal HypB for [NiFe] Hydrogenase Maturation, JOURNAL OF MOLECULAR BIOLOGY, 10.1016/j.jmb.2013.02.004, 425, 10, 1627-1640, 2013.05.
5. Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K., Crystal Structures of the HypCD Complex and the HypCDE Ternary Complex: Transient Intermediate Complexes during [NiFe] Hydrogenase Maturation, STRUCTURE, 10.1016/j.str.2012.09.018, 20, 12, 2124-2137, 2012.12.
6. Tominaga, T., Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K., Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1, ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 10.1107/S1744309112036421, 68, 1153-1157, 2012.10.
7. Maruyama, H., Shin, M., Oda, T., Matsumi, R., Ohniwa, RL., Itoh, T., Shirahige, K., Imanaka, T., Atomi, H., Yoshimura, SH., Takeyasu, K., Histone and TK0471/TrmBL2 form a novel heterogeneous genome architecture in the hyperthermophilic archaeon Thermococcus kodakarensis, MOLECULAR BIOLOGY OF THE CELL, 10.1091/mbc.E10-08-0668, 22, 3, 386-398, 2011.02.
8. Kim, Y.J., Lee, H.S., Kim, E.S., Bae, S.S., Lim, J.K., Matsumi, R., Lebedinsky, A.V., Sokolova, T.G., Kozhevnikova, D.A., Cha, S.S., Kim, S.J., Kwon, K.K., Imanaka, T., Atomi, H., Bonch-Osmolovskaya, E.A., Lee, J.H., Kang, S.G., Formate-driven growth coupled with H-2 production, NATURE, 10.1038/nature09375, 467, 7313, 352-U137, 2010.09.
9. Borges, N., Matsumi, R., Imanaka, T., Atomi, H., Santos, H., Thermococcus kodakarensis Mutants Deficient in Di-myo-Inositol Phosphate Use Aspartate To Cope with Heat Stress, JOURNAL OF BACTERIOLOGY, 10.1128/JB.01115-09, 192, 1, 191-197, 2010.01.
10. Watanabe, S., Arai, T., Matsumi, R., Atomi, H., Imanaka, T., Miki, K., Crystal Structure of HypA, a Nickel-Binding Metallochaperone for [NiFe] Hydrogenase Maturation, JOURNAL OF MOLECULAR BIOLOGY, 10.1016/j.jmb.2009.09.030, 394, 3, 448-459, 2009.12.
11. Santangelo, T. J., Cubonova, L., Matsumi, R., Atomi, H., Imanaka, T., Reeve, J. N., Polarity in archaeal operon transcription in Thermococcus kodakaraensis, JOURNAL OF BACTERIOLOGY, 10.1128/JB.01811-07, 190, 6, 2244-2248, 2008.03.
12. Arai, T., Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K, Crystallization and preliminary X-ray crystallographic study of [NiFe]-hydrogenase maturation factor HypE from Thermococcus kodakaraensis KOD1, ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 10.1107/S1744309107038833, 63, 765-767, 2007.09.
13. Watanabe, S., Matsumi, R., Arai, T., Atomi, H., Imanaka, T., Miki, K., Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: Insights into cyanation reaction by thiol redox signaling, MOLECULAR CELL, 10.1016/j.molcel.2007.05.039, 27, 1, 29-40, 2007.07.
14. Watanabe, S., Matsumi, R., Atomi, H., Imanaka, T., Miki, K., Crystallization and preliminary X-ray crystallographic studies of the [NiFe] hydrogenase maturation proteins HypC and HypD, ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS, 10.1107/S1744309107023391, 63, 538-541, 2007.06.
15. Matsumi, R., Manabe, K., Fukui, T., Atomi, H., Imanaka, T., Disruption of a sugar transporter gene cluster in a hyperthermophilic archaeon using a host-marker system based on antibiotic resistance, JOURNAL OF BACTERIOLOGY, 10.1128/JB.01692-06, 189, 7, 2683-2691, 2007.04.
16. Ohniwa, R. L., Morikawa, K., Kim, J., Kobori, T., Hizume, K., Matsumi, R., Atomi, H., Imanaka, T., Ohta, T., Wada, C., Yoshimura, S. H., Takeyasu, K., Atomic force Microscopy dissects the hierarchy of genome architectures in eukaryote, prokaryote, and chloroplast, MICROSCOPY AND MICROANALYSIS, 10.1017/S1431927607070055, 13, 1, 3-12, 2007.02.
17. Yamatsu, A., Matsumi, R., Atomi, H., Imanaka, T., Isolation and characterization of a novel poly(vinyl alcohol)-degrading bacterium, Sphingopyxis sp PVA3, APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 10.1007/s00253-006-0351-4, 72, 4, 804-811, 2006.10.
18. Matsumi, R., Atomi, H., Imanaka, T., Identification of the amino acid residues essential for proteolytic activity in an archaeal signal peptide peptidase, JOURNAL OF BIOLOGICAL CHEMISTRY, 10.1074/jbc.M513754200, 281, 15, 10533-10539, 2006.04.
19. Matsumi, R., Atomi, H., Imanaka, T., Biochemical properties of a putative signal peptide peptidase from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1, JOURNAL OF BACTERIOLOGY, 10.1128/JB.187.20.7072-7080.2005, 187, 20, 7072-7080, 2005.10.
20. Fukui, T., Atomi, H., Kauai, T., Matsumi, R., Fujiwara, S., Imanaka, T., Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes, GENOME RESEARCH, 10.1101/gr.3003105, 15, 3, 352-363, 2005.03.
21. Atomi, H, Matsumi, R., Imanaka, T., Reverse gyrase is not a prerequisite for hyperthermophilic life, JOURNAL OF BACTERIOLOGY, 10.1128/JB.186.14.4829-4833.2004, 186, 14, 4829-4833, 2004.07.